Rice gene details
Searching for LOC_Os07g38860 [OsGH3.10 - Probable indole-3-acetic acid-amido synthetase ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g38860.1 479 30 478 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 MCE:1000103 fluridone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 AQEN007 blast disease resistance
5 CQAV3 osmotic adjustment capacity
6 CQAW23 root number
7 CQAX7 plant height
8 CQN47 panicle weight
9 AQBM002 callus induction
10 AQAP057 brown planthopper resistance
11 AQFW085 plant height
12 AQFW104 panicle length
13 AQAL036 biomass yield
14 AQAL056 deep root dry weight
15 AQDI003 hybrid incompatibilty
16 AQDJ002 plant height
17 AQDK006 ratooning ability
18 CQB23 plant height
19 CQB24 seed set percent
20 AQE031 grain yield per plant
21 AQEK013 iron sensitivity
22 AQBI005 pollen fertility
23 CQE58 specific leaf area
24 AQCK004 seed dormancy
25 CQE59 seed dormancy
26 AQFR021 seedling vigor
27 AQAM028 rhizome branching angle
28 AQAM029 rhizome length
29 AQAM030 rhizome internode length
30 AQO072 root length
31 AQX004 primary branch
32 AQX005 primary branch
33 AQX012 secondary branch
34 AQZ007 relative root length
35 CQAS83 panicle number
36 CQAS84 spikelet number
37 CQAS85 spikelet density
38 CQAS88 1000-seed weight
39 CQAS89 spikelet number
40 CQAS90 seed number
41 AQED009 days to maturity
42 AQED010 days to maturity
43 AQED004 days to heading
44 CQAS79 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India