Rice gene details
Searching for LOC_Os07g40290 [OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g40290.1 606 28 581 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -7
N22 Root FC
  -2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009733 response to auxin stimulus  
3 GO:0010928 regulation of auxin mediated signaling pathway  
4 GO:0048440 carpel development  
5 GO:0048653 anther development  
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 MCE:1000103 fluridone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 AQEN007 blast disease resistance
5 CQAV3 osmotic adjustment capacity
6 CQAW23 root number
7 CQAX7 plant height
8 CQN47 panicle weight
9 AQAP057 brown planthopper resistance
10 AQFW085 plant height
11 AQFW104 panicle length
12 AQAL036 biomass yield
13 AQAL056 deep root dry weight
14 AQE031 grain yield per plant
15 AQEK013 iron sensitivity
16 AQBI005 pollen fertility
17 CQE58 specific leaf area
18 AQCK004 seed dormancy
19 CQE59 seed dormancy
20 AQFR021 seedling vigor
21 AQAM028 rhizome branching angle
22 AQAM029 rhizome length
23 AQAM030 rhizome internode length
24 AQX004 primary branch
25 AQX005 primary branch
26 AQX012 secondary branch
27 CQAS83 panicle number
28 CQAS84 spikelet number
29 CQAS85 spikelet density
30 CQAS88 1000-seed weight
31 CQAS89 spikelet number
32 CQAS90 seed number
33 AQED009 days to maturity
34 AQED010 days to maturity
35 AQED004 days to heading
36 CQAS79 plant height
37 AQEL005 root length
38 CQK7 panicle number
39 CQK8 panicle number
40 AQO004 biomass yield
41 AQEO012 seed length
42 AQEO020 seed length to width ratio
43 AQEP014 seedling vigor
44 AQDL004 stomatal closure rate

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007023 IE.04 inflorescence fully emerged from flag leaf sheath (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
4 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000369 basal internode (+)
3 MCP:1000527 etiolated shoot (+)
4 PO:0000003 whole plant (+)
5 PO:0005004 shoot node (+)
6 PO:0005052 plant callus (+)
7 PO:0009005 root (+)
8 PO:0009006 shoot system (+)
9 PO:0009029 stamen (+)
10 PO:0009046 flower (+)
11 PO:0009049 inflorescence (+)
12 PO:0009066 anther (+)
13 PO:0020039 leaf lamina (+)
14 PO:0025034 leaf (+)
15 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000001 pollen viability (+)
2 MCT:1000283 flowering (+)
3 MCT:1000284 apical dominance (+)
4 MCT:1000285 ectopic root formation at aerial node (+)
5 MCT:1000286 presence of open floret (+)
6 MCT:1000288 defective anther dehiscence (+)
7 TO:0000050 inflorescence branching (+)
8 TO:0000145 internode length (+)
9 TO:0000207 plant height (+)
10 TO:0000271 inflorescence length (+)
11 TO:0002602 pistil size (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Yadav Shri Ram; Khanday Imtiyaz; Majhi Bharat Bhusan; Veluthambi Karuppannan; Vijayraghavan Usha; Auxin-Responsive OsMGH3, a Common Downstream Target of OsMADS1 and OsMADS6, Controls Rice Floret Fertility. Plant & cell physiology 2011:
PMID [22016342]


Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India