Rice gene details
Searching for LOC_Os07g41360 [alpha-1,4-glucan-protein synthase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g41360.1 367 11 354 PF03214.5 RGP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  6
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009555 pollen development  
2 GO:0010584 pollen exine formation  
3 GO:0048589 developmental growth  
4 GO:0048653 anther development  
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0005975 carbohydrate metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005575 cellular_component (RGAP)
3 GO:0005829 cytosol (RGAP)
4 GO:0005794 Golgi apparatus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 AQEN007 blast disease resistance
5 CQAV3 osmotic adjustment capacity
6 CQAW23 root number
7 CQAX7 plant height
8 CQN47 panicle weight
9 AQAP057 brown planthopper resistance
10 AQFW085 plant height
11 AQFW104 panicle length
12 AQAL036 biomass yield
13 AQAL056 deep root dry weight
14 AQE031 grain yield per plant
15 AQBI005 pollen fertility
16 AQCK004 seed dormancy
17 CQE59 seed dormancy
18 AQFR021 seedling vigor
19 AQAM028 rhizome branching angle
20 AQAM029 rhizome length
21 AQAM030 rhizome internode length
22 AQX004 primary branch
23 AQX005 primary branch
24 AQX012 secondary branch
25 CQAS83 panicle number
26 CQAS84 spikelet number
27 CQAS85 spikelet density
28 CQAS88 1000-seed weight
29 CQAS89 spikelet number
30 CQAS90 seed number
31 AQED009 days to maturity
32 AQED010 days to maturity
33 AQED004 days to heading
34 CQAS79 plant height
35 AQEL005 root length
36 CQK7 panicle number
37 CQK8 panicle number
38 AQO004 biomass yield
39 AQEO012 seed length
40 AQEO020 seed length to width ratio
41 AQEP014 seedling vigor
42 AQDL004 stomatal closure rate
43 AQCB034 spikelets per panicle length
44 AQGI080 root dry weight
45 CQR6 protein content
46 AQEK009 iron sensitivity
47 CQAL20 grain belly percent white
48 AQBS005 days to heading
49 AQBS013 days to maturity
50 AQBS052 seed set percent
51 AQCG002 male fertility restoration

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000519 mature inflorescence stage (+)
2 MCP:1000521 mature plant stage (+)
3 MCP:1000567 0-1 mm floret length stage (+)
4 MCP:1000568 1-2 mm floret length stage (+)
5 MCP:1000569 2-4 mm floret length stage (+)
6 MCP:1000570 4-6 mm floret length stage (+)
7 MCP:1000571 6-7 mm floret length stage (+)
8 MCP:1000572 7 mm floret length stage (+)
9 MCP:1000573 mature anther stage (+)
10 PO:0001016 L mature pollen stage (+)
11 PO:0001052 2 leaf expansion stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005005 shoot internode (+)
3 PO:0006340 adult leaf (+)
4 PO:0009005 root (+)
5 PO:0009030 carpel (+)
6 PO:0009037 lemma (+)
7 PO:0009038 palea (+)
8 PO:0009049 inflorescence (+)
9 PO:0009066 anther (+)
10 PO:0020104 leaf sheath (+)
11 PO:0025034 leaf (+)
12 PO:0025281 pollen (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000110 starch accumulation (+)
2 MCT:1000144 presence of regular shaped pollen grain (+)
3 MCT:1000603 anther curling (+)
4 MCT:1000604 presence of pitted pollen surface (+)
5 MCT:1000605 presence of irregular pollen surface (+)
6 MCT:1000650 arabinan content (+)
7 MCT:1000651 exine deposition (+)
8 TO:0000052 primary branching of inflorescence (+)
9 TO:0000357 growth and development trait (+)
10 TO:0000531 anther length (+)
11 TO:0002738 floret number per inflorescence (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sumiyoshi Minako; Inamura Takuya; Nakamura Atsuko; Aohara Tsutomu; Ishii Tadashi; Satoh Shinobu; Iwai Hiroaki; UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa). Plant & cell physiology 2015:56
PMID [25261533]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India