Rice gene details
Searching for LOC_Os07g42860 [cyclin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g42860.1 357 63 195 PF00134.15 Cyclin_N
2 LOC_Os07g42860.1 357 197 254 PF02984.11 Cyclin_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  3
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0030234 enzyme regulator activity (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
2 GO:0008152 metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0007049 cell cycle (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAP057 brown planthopper resistance
7 AQFW085 plant height
8 AQFW104 panicle length
9 AQAL036 biomass yield
10 AQAL056 deep root dry weight
11 AQBI005 pollen fertility
12 AQX004 primary branch
13 AQX005 primary branch
14 AQX012 secondary branch
15 CQAS79 plant height
16 AQEO012 seed length
17 AQEO020 seed length to width ratio
18 AQEP014 seedling vigor
19 AQDL004 stomatal closure rate
20 AQEK009 iron sensitivity
21 CQAL20 grain belly percent white
22 AQBS005 days to heading
23 AQBS013 days to maturity
24 AQBS052 seed set percent
25 AQCG002 male fertility restoration
26 AQCU086 panicle length
27 AQCU172 spikelet fertility
28 AQFW029 spikelet fertility
29 AQFW038 spikelet fertility
30 AQCU189 days to heading
31 AQCU214 leaf length
32 AQCU227 leaf width
33 AQFW194 days to heading
34 AQCJ002 rice yellow mottle virus resistance
35 CQE60 plant height
36 CQN58 spikelet number
37 AQAF033 blast disease resistance
38 AQCB009 spikelet number
39 AQEX011 root length
40 AQGI071 root dry weight
41 AQGI151 biomass yield
42 AQHR022 tiller number
43 AQE007 days to flower
44 AQE018 filled grain number
45 CQAJ16 yield
46 CQAJ17 tiller number
47 CQAJ23 grain number
48 CQAJ4 tiller number
49 AQGD018 grain shattering
50 AQGD024 hull color
51 AQGD026 hull color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os11g40030 - LOC_Os07g42860 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India