Rice gene details
Searching for LOC_Os07g42940 [CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g42940.1 340 4 260 PF00069.17 Pkinase
2 LOC_Os07g42940.2 264 1 184 PF00069.17 Pkinase
3 LOC_Os07g42940.3 264 1 184 PF00069.17 Pkinase
4 LOC_Os07g42940.4 264 1 184 PF00069.17 Pkinase
5 LOC_Os07g42940.5 240 4 218 PF00069.17 Pkinase
6 LOC_Os07g42940.6 240 4 218 PF00069.17 Pkinase
7 LOC_Os07g42940.7 182 1 171 PF00069.17 Pkinase
8 LOC_Os07g42940.8 128 4 117 PF00069.17 Pkinase
9 LOC_Os07g42940.9 233 4 216 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000989 transcription factor binding transcription factor activity  
2 GO:0016301 kinase activity  
3 GO:0005515 protein binding (RGAP)
4 GO:0016301 kinase activity (RGAP)
5 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006468 protein phosphorylation  
2 GO:0006970 response to osmotic stress  
3 GO:0009628 response to abiotic stimulus  
4 GO:0009651 response to salt stress  
5 GO:0009787 regulation of abscisic acid mediated signaling pathway  
6 GO:0010555 response to mannitol stimulus  
7 GO:0008152 metabolic process (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0009719 response to endogenous stimulus (RGAP)
10 GO:0007165 signal transduction (RGAP)
11 GO:0006950 response to stress (RGAP)
12 GO:0009628 response to abiotic stimulus (RGAP)
13 GO:0009607 response to biotic stimulus (RGAP)
14 GO:0009058 biosynthetic process (RGAP)
15 GO:0006629 lipid metabolic process (RGAP)
16 GO:0006464 protein modification process (RGAP)
17 GO:0005975 carbohydrate metabolic process (RGAP)
18 GO:0040007 growth (RGAP)
19 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005829 cytosol  
3 GO:0005737 cytoplasm (RGAP)
4 GO:0005829 cytosol (RGAP)
5 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (-)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007173 warm/hot temperature regimen (-)
5 EO:0007180 2,4-dichlorophenoxyacetic acid (-)
6 EO:0007332 cold air temperature regimen (-)
7 MCE:1000044 mannitol (+)
8 MCE:1000078 potassium chloride regimen (KCl) (+)
9 MCE:1000120 sorbitol (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAP057 brown planthopper resistance
7 AQFW085 plant height
8 AQFW104 panicle length
9 AQAL036 biomass yield
10 AQAL056 deep root dry weight
11 AQBI005 pollen fertility
12 AQX004 primary branch
13 AQX005 primary branch
14 AQX012 secondary branch
15 CQAS79 plant height
16 AQEO012 seed length
17 AQEO020 seed length to width ratio
18 AQEP014 seedling vigor
19 AQDL004 stomatal closure rate
20 AQEK009 iron sensitivity
21 CQAL20 grain belly percent white
22 AQBS005 days to heading
23 AQBS013 days to maturity
24 AQBS052 seed set percent
25 AQCG002 male fertility restoration
26 AQCU086 panicle length
27 AQCU172 spikelet fertility
28 AQFW029 spikelet fertility
29 AQFW038 spikelet fertility
30 AQCU189 days to heading
31 AQCU214 leaf length
32 AQCU227 leaf width
33 AQFW194 days to heading
34 AQCJ002 rice yellow mottle virus resistance
35 CQE60 plant height
36 CQN58 spikelet number
37 AQAF033 blast disease resistance
38 AQCB009 spikelet number
39 AQEX011 root length
40 AQGI071 root dry weight
41 AQGI151 biomass yield
42 AQHR022 tiller number
43 AQE007 days to flower
44 AQE018 filled grain number
45 CQAJ16 yield
46 CQAJ17 tiller number
47 CQAJ23 grain number
48 CQAJ4 tiller number
49 AQGD018 grain shattering
50 AQGD024 hull color
51 AQGD026 hull color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
3 PO:0020039 leaf lamina (+)
4 PO:0020104 leaf sheath (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000313 kinase activity (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 BAG95943 - --- LOC_Os07g42940 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 BAG95943 - --- LOC_Os07g42940 - --- Protein-protein interaction analysis : Bimolecular Fluorescence Complementation (BiFC) analysis
3 BAG95943 - --- LOC_Os07g42940 - --- In vitro Phosphorylation Assay
4 LOC_Os07g42940 - --- LOC_Os03g16170 - --- Protein-protein interaction analysis : Bimolecular Fluorescence Complementation (BiFC) analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Tang Ning; Zhang Hua; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice. Plant physiology 2012:158
PMID [22301130]


3  Kim Hyunmi; Hwang Hyunsik; Hong Jung-Woo; Lee Young-Na; Ahn Il Pyung; Yoon In Sun; Yoo Sang-Dong; Lee Sukchan; Lee Sung Chul; Kim Beom-Gi; A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. Journal of Experimental Botany 2011:
PMID [22071266]


4  Kobayashi Yuhko; Yamamoto Shuhei; Minami Hideyuki; Kagaya Yasuaki; Hattori Tsukaho; Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid. The Plant Cell 2004:16
PMID [15084714]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India