Rice gene details
Searching for LOC_Os07g43290 [LTPL56 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g43290.1 178 37 115 PF00234.14 Tryp_alpha_amyl
2 LOC_Os07g43290.2 164 37 115 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  3
IR64 Root FC
  5

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0008289 lipid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009739 response to gibberellin stimulus  
2 GO:0006810 transport (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007204 1-naphthaleneacetic acid (+)
3 MCE:1000023 benzyl aminopurine (BPA) (+)
4 MCE:1000288 GA3 gibberellin (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAL036 biomass yield
7 AQAL056 deep root dry weight
8 AQBI005 pollen fertility
9 AQX004 primary branch
10 AQX005 primary branch
11 AQX012 secondary branch
12 CQAS79 plant height
13 AQEO012 seed length
14 AQEO020 seed length to width ratio
15 AQEP014 seedling vigor
16 AQDL004 stomatal closure rate
17 AQEK009 iron sensitivity
18 CQAL20 grain belly percent white
19 AQBS005 days to heading
20 AQBS013 days to maturity
21 AQBS052 seed set percent
22 AQCG002 male fertility restoration
23 AQCU189 days to heading
24 AQCU214 leaf length
25 AQCU227 leaf width
26 AQFW194 days to heading
27 AQCJ002 rice yellow mottle virus resistance
28 CQE60 plant height
29 CQN58 spikelet number
30 AQAF033 blast disease resistance
31 AQCB009 spikelet number
32 AQEX011 root length
33 AQGI071 root dry weight
34 AQGI151 biomass yield
35 AQHR022 tiller number
36 AQE007 days to flower
37 AQE018 filled grain number
38 CQAJ16 yield
39 CQAJ17 tiller number
40 CQAJ23 grain number
41 CQAJ4 tiller number
42 AQGD018 grain shattering
43 AQGD024 hull color
44 AQGD026 hull color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000173 inflorescence 5-10cm stage (+)
2 MCP:1000176 inflorescence 22-30cm stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India