Rice gene details
Searching for LOC_Os07g46460 [ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g46460.1 1616 97 469 PF00310.13 GATase_2
2 LOC_Os07g46460.1 1616 543 840 PF04898.6 Glu_syn_central
3 LOC_Os07g46460.1 1616 897 1282 PF01645.9 Glu_synthase
4 LOC_Os07g46460.1 1616 1360 1555 PF01493.11 GXGXG
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0060359 response to ammonium ion  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005576 extracellular region (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007097 ammonium sulfate regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-3282 ammonia assimilation cycle II
2 PWY-4341 glutamate biosynthesis V

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAL036 biomass yield
7 AQAL056 deep root dry weight
8 AQBI005 pollen fertility
9 AQDL004 stomatal closure rate
10 AQCG002 male fertility restoration
11 AQCJ002 rice yellow mottle virus resistance
12 CQN58 spikelet number
13 AQE007 days to flower
14 AQE018 filled grain number
15 AQGD018 grain shattering
16 AQGD024 hull color
17 AQGD026 hull color
18 AQGJ010 blast disease resistance
19 AQCU006 days to heading
20 AQCU117 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ranathunge Kosala; El-Kereamy Ashraf; Gidda Satinder; Bi Yong-Mei; Rothstein Steven J; AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions. Journal of experimental botany 2014:65
PMID [24420570]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India