Rice gene details
Searching for LOC_Os07g47100 [transporter, monovalent cation:proton antiporter-2 family, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g47100.1 536 24 443 PF00999.13 Na_H_Exchanger
2 LOC_Os07g47100.2 536 24 443 PF00999.13 Na_H_Exchanger
3 LOC_Os07g47100.3 441 24 438 PF00999.13 Na_H_Exchanger
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005451 monovalent cation:hydrogen antiporter activity  
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009651 response to salt stress  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0010555 response to mannitol stimulus  
4 GO:0006810 transport (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 MCE:1000044 mannitol (+)
4 MCE:1000078 potassium chloride regimen (KCl) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAL036 biomass yield
7 AQAL056 deep root dry weight
8 AQBI005 pollen fertility
9 AQDL004 stomatal closure rate
10 AQCG002 male fertility restoration
11 AQCJ002 rice yellow mottle virus resistance
12 CQN58 spikelet number
13 AQE007 days to flower
14 AQE018 filled grain number
15 AQGD018 grain shattering
16 AQGD024 hull color
17 AQGD026 hull color
18 AQGJ010 blast disease resistance
19 AQCU006 days to heading
20 AQCU117 days to heading
21 CQA18 days to heading
22 CQA19 vegetative growth time
23 CQA20 reproductive growth time
24 AQCK010 days to heading
25 AQCV043 chalkiness of endosperm
26 CQE61 days to heading
27 CQN18 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000150 upper leaf blade (+)
2 MCP:1000151 upper leaf sheath (+)
3 PO:0000003 whole plant (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020103 flag leaf (+)
12 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os09g13570 - --- LOC_Os07g47100 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


2  Asano Takayuki; Hakata Makoto; Nakamura Hidemitsu; Aoki Naohiro; Komatsu Setsuko; Ichikawa Hiroaki; Hirochika Hirohiko; Ohsugi Ryu; Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice. Plant Molecular Biology 2011:75
PMID [21136139]


3  Song Shi-Yong; Chen Ying; Chen Jie; Dai Xiao-Yan; Zhang Wen-Hao; Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011:
PMID [21448719]


4  Fukuda Atsunori; Nakamura Atsuko; Hara Naho; Toki Seiichi; Tanaka Yoshiyuki; Molecular and functional analyses of rice NHX-type Na(+)/H (+) antiporter genes. Planta 2010:
PMID [20963607]


5  Diédhiou Calliste J; Popova Olga V; Dietz Karl-Josef; Golldack Dortje; The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biology 2008:8
PMID [18442365]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India