Rice gene details
Searching for LOC_Os07g47490 [OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g47490.1 592 12 572 PF03321.5 GH3
2 LOC_Os07g47490.2 592 12 572 PF03321.5 GH3
3 LOC_Os07g47490.3 574 2 554 PF03321.5 GH3
4 LOC_Os07g47490.4 485 1 465 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -3
N22 Root FC
  -1
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 MCE:1000103 fluridone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQAL036 biomass yield
7 AQAL056 deep root dry weight
8 AQBI005 pollen fertility
9 AQDL004 stomatal closure rate
10 AQCJ002 rice yellow mottle virus resistance
11 CQN58 spikelet number
12 AQE007 days to flower
13 AQE018 filled grain number
14 AQGD018 grain shattering
15 AQGD024 hull color
16 AQGD026 hull color
17 AQGJ010 blast disease resistance
18 AQCU006 days to heading
19 AQCU117 days to heading
20 CQA18 days to heading
21 CQA19 vegetative growth time
22 CQA20 reproductive growth time
23 AQCK010 days to heading
24 AQCV043 chalkiness of endosperm
25 CQE61 days to heading
26 CQN18 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India