Rice gene details
Searching for LOC_Os07g48450 [no apical meristem protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g48450.1 347 12 140 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009615 response to virus  
4 GO:0009651 response to salt stress  
5 GO:0030912 response to deep water  
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
8 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 EO:0007339 rice tungro spherical virus (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000183 laid-down submergence (+)
7 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQBI005 pollen fertility
7 AQDL004 stomatal closure rate
8 CQN58 spikelet number
9 AQE007 days to flower
10 AQE018 filled grain number
11 AQGD018 grain shattering
12 AQGD024 hull color
13 AQGD026 hull color
14 AQGJ010 blast disease resistance
15 AQCU006 days to heading
16 AQCU117 days to heading
17 CQA18 days to heading
18 CQA19 vegetative growth time
19 CQA20 reproductive growth time
20 AQCK010 days to heading
21 AQCV043 chalkiness of endosperm
22 CQE61 days to heading
23 CQN18 soluble protein content
24 AQCN010 tiller number
25 AQGC033 penetrated root thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000330 pre-anthesis stage (+)
2 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009006 shoot system (+)
3 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]


Nuruzzaman Mohammed; Manimekalai Ramaswamy; Sharoni Akhter Most; Satoh Kouji; Kondoh Hiroaki; Ooka Hisako; Kikuchi Shoshi; Genome-wide analysis of NAC transcription factor family in rice. Gene 2010:465
PMID [20600702]


Fang Yujie; You Jun; Xie Kabin; Xie Weibo; Xiong Lizhong; Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Molecular Genetics and Genomics 2008:280
PMID [18813954]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India