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Searching for LOC_Os07g48450
[no apical meristem protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os07g48450.1 |
347 |
12 |
140 |
PF02365.7 |
NAM |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005575 |
cellular_component |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007332 |
cold air temperature regimen |
(+) |
3 |
EO:0007339 |
rice tungro spherical virus |
(+) |
4 |
EO:0007404 |
drought environment |
(+) |
5 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
6 |
MCE:1000183 |
laid-down submergence |
(+) |
7 |
MCE:1000203 |
dark regimen |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000330 |
pre-anthesis stage |
(+) |
2 |
PO:0007115 |
LP.04 four leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009006 |
shoot system |
(+) |
3 |
PO:0009025 |
vascular leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]
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2 |
Nuruzzaman Mohammed; Manimekalai Ramaswamy; Sharoni Akhter Most; Satoh Kouji; Kondoh Hiroaki; Ooka Hisako; Kikuchi Shoshi; Genome-wide analysis of NAC transcription factor family in rice. Gene 2010:465
PMID [20600702]
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3 |
Fang Yujie; You Jun; Xie Kabin; Xie Weibo; Xiong Lizhong; Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Molecular Genetics and Genomics 2008:280
PMID [18813954]
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