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Searching for LOC_Os07g48640
[short-chain dehydrogenase/reductase, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os07g48640.1 |
374 |
77 |
170 |
PF00106.17 |
adh_short |
2 |
LOC_Os07g48640.2 |
320 |
23 |
116 |
PF00106.17 |
adh_short |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003824 |
catalytic activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0010212 |
response to ionizing radiation |
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2 |
GO:0008152 |
metabolic process |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005829 |
cytosol |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000310 |
nitrogen ion irradiation |
(+) |
2 |
MCE:1000326 |
vacuum treatment |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
PWY-3742 |
tetrahydrofolate biosynthesis II |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Chen Q F; Ya H Y; Feng Y R; Jiao Z; Expression of the key genes involved in ABA biosynthesis in rice implanted by ion beam. Applied biochemistry and biotechnology 2014:173
PMID [24634194]
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