Rice gene details
Searching for LOC_Os07g48640 [short-chain dehydrogenase/reductase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g48640.1 374 77 170 PF00106.17 adh_short
2 LOC_Os07g48640.2 320 23 116 PF00106.17 adh_short
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  7
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010212 response to ionizing radiation  
2 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000310 nitrogen ion irradiation (+)
2 MCE:1000326 vacuum treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-3742 tetrahydrofolate biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD028 pericarp color
2 AQEN007 blast disease resistance
3 CQAV3 osmotic adjustment capacity
4 CQAW23 root number
5 CQAX7 plant height
6 AQBI005 pollen fertility
7 AQDL004 stomatal closure rate
8 CQN58 spikelet number
9 AQE007 days to flower
10 AQE018 filled grain number
11 AQGD018 grain shattering
12 AQGD024 hull color
13 AQGD026 hull color
14 AQGJ010 blast disease resistance
15 AQCU006 days to heading
16 AQCU117 days to heading
17 CQA18 days to heading
18 CQA19 vegetative growth time
19 CQA20 reproductive growth time
20 AQCK010 days to heading
21 AQCV043 chalkiness of endosperm
22 CQE61 days to heading
23 CQN18 soluble protein content
24 AQCN010 tiller number
25 AQGC033 penetrated root thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chen Q F; Ya H Y; Feng Y R; Jiao Z; Expression of the key genes involved in ABA biosynthesis in rice implanted by ion beam. Applied biochemistry and biotechnology 2014:173
PMID [24634194]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India