Rice gene details
Searching for LOC_Os08g01420 [PHD-finger domain containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g01420.1 564 298 348 PF00628.21 PHD
2 LOC_Os08g01420.1 564 480 524 PF00628.21 PHD
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (+)
2 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 AQEI077 leaf senescence
3 AQEI093 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0020039 leaf lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os09g04890 - --- LOC_Os08g01420 - --- Protein-protein interaction analysis : Co-immunoprecipitation
2 LOC_Os09g04890 - 561-749 LOC_Os08g01420 - --- Protein-protein interaction analysis : Co-immunoprecipitation
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Choi Sang Chul; Lee Shinyoung; Kim Sung-Ryul; Lee Yang-Seok; Liu Chunyan; Cao Xiaofeng; An Gynheung; Trithorax Group Protein Oryza sativa Trithorax1 Controls Flowering Time in Rice via Interaction with Early heading date3. Plant physiology 2014:164
PMID [24420930]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India