Rice gene details
Searching for LOC_Os08g02630 [photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os08g02630.1 206 37 107 seg
2 LOC_Os08g02630.1 206 132 145 seg
3 LOC_Os08g02630.1 206 149 167 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  1
N22 Root FC
  28
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  4

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
Biological process
Not found
1 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009579 thylakoid (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007235 silicon nutrient regimen (+)
2 EO:0007309 zinc nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQE62 chlorophyll content
3 AQCK005 seed dormancy
4 CQE63 seed dormancy
5 CQG7 leaf rolling time
6 CQN19 glutamine synthetase content
7 CQX30 internode length
8 CQX4 days to heading
9 CQN39 leaf senescence
10 CQAU2 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Alin; Li Ping; Fan Fenliang; Li Zhaojun; Liang Yongchao; The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress. PloS one 2014:9
PMID [25426937]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India