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Searching for LOC_Os08g05520
[myb-like DNA-binding domain containing protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os08g05520.1 |
360 |
14 |
61 |
PF00249.23 |
Myb_DNA-binding |
2 |
LOC_Os08g05520.1 |
360 |
67 |
112 |
PF00249.23 |
Myb_DNA-binding |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0001071 |
nucleic acid binding transcription factor activity |
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2 |
GO:0003677 |
DNA binding |
(RGAP) |
3 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0048589 |
developmental growth |
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2 |
GO:0009058 |
biosynthetic process |
(RGAP) |
3 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
4 |
GO:0009987 |
cellular process |
(RGAP) |
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Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000493 |
inflorescence 5cm stage |
(+) |
2 |
MCP:1000518 |
seedling development stage |
(+) |
3 |
MCP:1000519 |
mature inflorescence stage |
(+) |
4 |
MCP:1000521 |
mature plant stage |
(+) |
5 |
PO:0007016 |
4 flowering |
(+) |
6 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Yang Chunhua; Li Dayong; Liu Xue; Ji Chengjun; Hao Lili; Zhao Xianfeng; Li Xiaobing; Chen Caiyan; Cheng Zhukuan; Zhu Lihuang; OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [24906444]
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