Rice gene details
Searching for LOC_Os08g05520 [myb-like DNA-binding domain containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g05520.1 360 14 61 PF00249.23 Myb_DNA-binding
2 LOC_Os08g05520.1 360 67 112 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -3
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0001071 nucleic acid binding transcription factor activity  
2 GO:0003677 DNA binding (RGAP)
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0048589 developmental growth  
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 AQCK005 seed dormancy
3 CQE63 seed dormancy
4 CQG7 leaf rolling time
5 CQN19 glutamine synthetase content
6 CQX30 internode length
7 CQX4 days to heading
8 CQN39 leaf senescence
9 CQAU2 spikelet number
10 AQBK019 days to heading
11 AQEO017 seed width
12 AQCU110 spikelet fertility
13 AQCU161 spikelet number
14 AQFW126 spikelet fertility
15 AQEO022 100-seed weight
16 AQAX019 days to heading
17 AQEI014 leaf senescence
18 AQEI081 leaf senescence
19 AQEI125 leaf senescence
20 AQFJ033 seed number
21 AQFJ047 panicle length
22 AQGP065 spikelet fertility
23 AQA009 tiller number
24 CQAP1 scent
25 CQE64 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000493 inflorescence 5cm stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000519 mature inflorescence stage (+)
4 MCP:1000521 mature plant stage (+)
5 PO:0007016 4 flowering (+)
6 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000230 third leaf from top (+)
2 MCP:1000406 second leaf from top (+)
3 PO:0000003 whole plant (+)
4 PO:0004001 bulliform cell (+)
5 PO:0009005 root (+)
6 PO:0009047 stem (+)
7 PO:0009049 inflorescence (+)
8 PO:0020039 leaf lamina (+)
9 PO:0020103 flag leaf (+)
10 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000375 cellulose content (+)
2 MCT:1000576 leaf breaking force (+)
3 MCT:1000578 brittle leaf (+)
4 MCT:1000579 leaf rolling index (+)
5 TO:0002681 leaf curling (+)
6 TO:0002684 plant cell size (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yang Chunhua; Li Dayong; Liu Xue; Ji Chengjun; Hao Lili; Zhao Xianfeng; Li Xiaobing; Chen Caiyan; Cheng Zhukuan; Zhu Lihuang; OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [24906444]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India