Rice gene details
Searching for LOC_Os08g07840 [PolI-like DNA polymerase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g07840.1 1034 343 386 PF01612.12 3_5_exonuc
2 LOC_Os08g07840.1 1034 633 1032 PF00476.12 DNA_pol_A
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  13
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006259 DNA metabolic process (RGAP)
4 GO:0016043 cellular component organization (RGAP)
Cellular component
Not found
1 GO:0005739 mitochondrion (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX30 internode length
3 CQX4 days to heading
4 CQN39 leaf senescence
5 CQAU2 spikelet number
6 AQBK019 days to heading
7 AQCU110 spikelet fertility
8 AQCU161 spikelet number
9 AQFW126 spikelet fertility
10 AQEO022 100-seed weight
11 AQAX019 days to heading
12 AQEI014 leaf senescence
13 AQEI081 leaf senescence
14 AQEI125 leaf senescence
15 AQFJ033 seed number
16 AQFJ047 panicle length
17 AQGP065 spikelet fertility
18 AQA009 tiller number
19 CQAP1 scent
20 CQE64 tiller number
21 AQCV044 chalkiness of endosperm
22 AQCV045 chalkiness of endosperm
23 AQAT005 days to heading
24 CQN20 soluble protein content
25 CQN37 leaf senescence
26 CQN38 leaf senescence
27 AQDJ001 days to heading
28 AQDJ004 plant height
29 AQDJ016 internode length
30 AQS010 days to heading
31 CQB26 days to heading
32 CQB27 plant height
33 CQB28 1000-grain weight
34 CQB40 days to heading
35 AQAF035 blast disease resistance
36 AQAF036 blast disease resistance
37 AQAF037 blast disease resistance
38 AQCQ042 1000-seed weight
39 AQCY011 filled grain number
40 AQEN008 blast disease resistance
41 AQEN015 blast disease resistance
42 CQAS102 spikelet number
43 CQAS103 seed number
44 CQAS104 yield
45 CQAS92 plant height
46 CQAS93 days to heading
47 CQAS94 days to maturity
48 CQAS97 spikelet number
49 CQAS98 spikelet density
50 CQAS99 seed number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jiang Quan; Mei Jie; Gong Xiao-Di; Xu Jian-Long; Zhang Jian-Hui; Teng Sheng; Lin Dong-Zhi; Dong Yan-Jun; Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage. Plant science : an international journal of experimental plant biology 2014:215-216
PMID [24388528]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India