Rice gene details
Searching for LOC_Os08g08070 [transporter family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g08070.1 520 26 488 PF00083.16 Sugar_tr
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -6
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  9

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005634 nucleus (RGAP)
3 GO:0005575 cellular_component (RGAP)
4 GO:0005773 vacuole (RGAP)
5 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX30 internode length
3 CQX4 days to heading
4 CQN39 leaf senescence
5 CQAU2 spikelet number
6 AQBK019 days to heading
7 AQCU110 spikelet fertility
8 AQCU161 spikelet number
9 AQFW126 spikelet fertility
10 AQEO022 100-seed weight
11 AQAX019 days to heading
12 AQEI014 leaf senescence
13 AQEI081 leaf senescence
14 AQEI125 leaf senescence
15 AQFJ033 seed number
16 AQFJ047 panicle length
17 AQGP065 spikelet fertility
18 AQA009 tiller number
19 CQAP1 scent
20 CQE64 tiller number
21 AQCV044 chalkiness of endosperm
22 AQCV045 chalkiness of endosperm
23 AQAT005 days to heading
24 CQN20 soluble protein content
25 CQN37 leaf senescence
26 CQN38 leaf senescence
27 AQDJ001 days to heading
28 AQDJ004 plant height
29 AQDJ016 internode length
30 AQS010 days to heading
31 CQB26 days to heading
32 CQB27 plant height
33 CQB28 1000-grain weight
34 CQB40 days to heading
35 AQAF035 blast disease resistance
36 AQAF036 blast disease resistance
37 AQAF037 blast disease resistance
38 AQCQ042 1000-seed weight
39 AQCY011 filled grain number
40 AQEN008 blast disease resistance
41 AQEN015 blast disease resistance
42 CQAS102 spikelet number
43 CQAS103 seed number
44 CQAS104 yield
45 CQAS92 plant height
46 CQAS93 days to heading
47 CQAS94 days to maturity
48 CQAS97 spikelet number
49 CQAS98 spikelet density
50 CQAS99 seed number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India