Rice gene details
Searching for LOC_Os08g09230 [starch synthase III, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g09230.1 1862 843 989 PF07036.3 SSIII
2 LOC_Os08g09230.1 1862 1015 1170 PF07036.3 SSIII
3 LOC_Os08g09230.1 1862 1183 1330 PF07036.3 SSIII
4 LOC_Os08g09230.1 1862 1341 1535 PF08323.3 Glyco_transf_5
5 LOC_Os08g09230.2 1775 843 989 PF07036.3 SSIII
6 LOC_Os08g09230.2 1775 1015 1170 PF07036.3 SSIII
7 LOC_Os08g09230.2 1775 1183 1330 PF07036.3 SSIII
8 LOC_Os08g09230.2 1775 1341 1535 PF08323.3 Glyco_transf_5
9 LOC_Os08g09230.2 1775 1578 1749 PF00534.12 Glycos_transf_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  1
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  -2
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-622 starch biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQCU110 spikelet fertility
7 AQCU161 spikelet number
8 AQFW126 spikelet fertility
9 AQEO022 100-seed weight
10 AQA009 tiller number
11 CQAP1 scent
12 CQN20 soluble protein content
13 CQN37 leaf senescence
14 CQN38 leaf senescence
15 AQDJ001 days to heading
16 AQDJ004 plant height
17 AQDJ016 internode length
18 AQS010 days to heading
19 CQB26 days to heading
20 CQB27 plant height
21 CQB28 1000-grain weight
22 CQB40 days to heading
23 AQEN008 blast disease resistance
24 AQEN015 blast disease resistance
25 CQAS102 spikelet number
26 CQAS103 seed number
27 CQAS104 yield
28 CQAS92 plant height
29 CQAS93 days to heading
30 CQAS94 days to maturity
31 CQAS97 spikelet number
32 CQAS98 spikelet density
33 CQAS99 seed number
34 AQDN005 days to heading
35 AQHE039 root thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000450 post-fertilization stage (+)
2 PO:0007038 FR.04 fruit ripening complete (+)
3 PO:0007106 LP.03 three leaves visible (+)
4 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009025 vascular leaf (+)
5 PO:0009072 ovary (+)
6 PO:0009089 endosperm (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000696 starch content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhou Hongju; Wang Lijun; Liu Guifu; Meng Xiangbing; Jing Yanhui; Shu Xiaoli; Kong Xiangli; Sun Jian; Yu Hong; Smith Steven M; Wu Dianxing; Li Jiayang; Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice. Proceedings of the National Academy of Sciences of the United States of America 2016:
PMID [27791174]


Xue Liang-Jiao; Zhang Jing-Jing; Xue Hong-Wei; Genome-wide analysis of the complex transcriptional networks of rice developing seeds. Plos One 2012:7
PMID [22363552]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India