Rice gene details
Searching for LOC_Os08g09800 [transposon protein, putative, unclassified ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g09800.1 862 60 118 PF03106.7 WRKY
2 LOC_Os08g09800.1 862 230 276 PF02892.7 zf-BED
3 LOC_Os08g09800.1 862 767 849 PF05699.6 hATC
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000116 mild drought (+)
2 MCE:1000117 severe drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQCU110 spikelet fertility
7 AQCU161 spikelet number
8 AQFW126 spikelet fertility
9 AQEO022 100-seed weight
10 AQA009 tiller number
11 CQAP1 scent
12 CQN20 soluble protein content
13 CQN37 leaf senescence
14 CQN38 leaf senescence
15 AQEN008 blast disease resistance
16 AQEN015 blast disease resistance
17 CQAS102 spikelet number
18 CQAS103 seed number
19 CQAS104 yield
20 CQAS92 plant height
21 CQAS93 days to heading
22 CQAS94 days to maturity
23 CQAS97 spikelet number
24 CQAS98 spikelet density
25 CQAS99 seed number
26 AQHE039 root thickness
27 AQEJ086 root activity
28 CQAO14 primary branch
29 AQCF042 filled grain number
30 AQCF043 spikelet number
31 AQDQ051 spikelet number
32 AQDQ052 plant height
33 AQDQ053 panicle length
34 AQDQ054 panicle length
35 CQAX35 plant height
36 CQAS96 panicle number
37 AQBK001 days to heading
38 CQAS100 seed set percent
39 CQAS101 1000-seed weight
40 CQAS95 panicle length
41 CQC6 days to heading
42 AQGD022 awn length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009049 inflorescence (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Sharoni Akhter Most; Satoh Kouji; Kumar Arvind; Leung Hei; Kikuchi Shoshi; Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation. Journal of plant physiology 2014:171
PMID [24189206]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India