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Searching for LOC_Os08g10310
[SHR5-receptor-like kinase, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os08g10310.1 |
1025 |
120 |
142 |
PF00560.25 |
LRR_1 |
2 |
LOC_Os08g10310.1 |
1025 |
144 |
166 |
PF00560.25 |
LRR_1 |
3 |
LOC_Os08g10310.1 |
1025 |
216 |
238 |
PF00560.25 |
LRR_1 |
4 |
LOC_Os08g10310.1 |
1025 |
240 |
262 |
PF00560.25 |
LRR_1 |
5 |
LOC_Os08g10310.1 |
1025 |
288 |
311 |
PF00560.25 |
LRR_1 |
6 |
LOC_Os08g10310.1 |
1025 |
313 |
335 |
PF00560.25 |
LRR_1 |
7 |
LOC_Os08g10310.1 |
1025 |
359 |
382 |
PF00560.25 |
LRR_1 |
8 |
LOC_Os08g10310.1 |
1025 |
691 |
888 |
PF00069.17 |
Pkinase |
9 |
LOC_Os08g10310.2 |
852 |
120 |
142 |
PF00560.25 |
LRR_1 |
10 |
LOC_Os08g10310.2 |
852 |
144 |
166 |
PF00560.25 |
LRR_1 |
11 |
LOC_Os08g10310.2 |
852 |
216 |
238 |
PF00560.25 |
LRR_1 |
12 |
LOC_Os08g10310.2 |
852 |
240 |
262 |
PF00560.25 |
LRR_1 |
13 |
LOC_Os08g10310.2 |
852 |
288 |
311 |
PF00560.25 |
LRR_1 |
14 |
LOC_Os08g10310.2 |
852 |
313 |
335 |
PF00560.25 |
LRR_1 |
15 |
LOC_Os08g10310.2 |
852 |
359 |
382 |
PF00560.25 |
LRR_1 |
16 |
LOC_Os08g10310.2 |
852 |
691 |
851 |
PF00069.17 |
Pkinase |
17 |
LOC_Os08g10310.3 |
672 |
120 |
142 |
PF00560.25 |
LRR_1 |
18 |
LOC_Os08g10310.3 |
672 |
144 |
166 |
PF00560.25 |
LRR_1 |
19 |
LOC_Os08g10310.3 |
672 |
216 |
238 |
PF00560.25 |
LRR_1 |
20 |
LOC_Os08g10310.3 |
672 |
240 |
262 |
PF00560.25 |
LRR_1 |
21 |
LOC_Os08g10310.3 |
672 |
288 |
311 |
PF00560.25 |
LRR_1 |
22 |
LOC_Os08g10310.3 |
672 |
313 |
335 |
PF00560.25 |
LRR_1 |
23 |
LOC_Os08g10310.3 |
672 |
359 |
382 |
PF00560.25 |
LRR_1 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Not found |
1 |
GO:0006464 |
protein modification process |
(RGAP) |
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Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007024 |
aerobic environment |
(+) |
2 |
EO:0007048 |
sodium chloride regimen |
(+) |
3 |
EO:0007068 |
ethylene regimen |
(+) |
4 |
EO:0007105 |
abscisic acid regimen |
(+) |
5 |
EO:0007332 |
cold air temperature regimen |
(+) |
6 |
EO:0007404 |
drought environment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]
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2 |
Jeong Jin Seo; Kim Youn Shic; Baek Kwang Hun; Jung Harin; Ha Sun-Hwa; Do Choi Yang; Kim Minkyun; Reuzeau Christophe; Kim Ju-Kon; Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiology 2010:153
PMID [20335401]
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