Rice gene details
Searching for LOC_Os08g10310 [SHR5-receptor-like kinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g10310.1 1025 120 142 PF00560.25 LRR_1
2 LOC_Os08g10310.1 1025 144 166 PF00560.25 LRR_1
3 LOC_Os08g10310.1 1025 216 238 PF00560.25 LRR_1
4 LOC_Os08g10310.1 1025 240 262 PF00560.25 LRR_1
5 LOC_Os08g10310.1 1025 288 311 PF00560.25 LRR_1
6 LOC_Os08g10310.1 1025 313 335 PF00560.25 LRR_1
7 LOC_Os08g10310.1 1025 359 382 PF00560.25 LRR_1
8 LOC_Os08g10310.1 1025 691 888 PF00069.17 Pkinase
9 LOC_Os08g10310.2 852 120 142 PF00560.25 LRR_1
10 LOC_Os08g10310.2 852 144 166 PF00560.25 LRR_1
11 LOC_Os08g10310.2 852 216 238 PF00560.25 LRR_1
12 LOC_Os08g10310.2 852 240 262 PF00560.25 LRR_1
13 LOC_Os08g10310.2 852 288 311 PF00560.25 LRR_1
14 LOC_Os08g10310.2 852 313 335 PF00560.25 LRR_1
15 LOC_Os08g10310.2 852 359 382 PF00560.25 LRR_1
16 LOC_Os08g10310.2 852 691 851 PF00069.17 Pkinase
17 LOC_Os08g10310.3 672 120 142 PF00560.25 LRR_1
18 LOC_Os08g10310.3 672 144 166 PF00560.25 LRR_1
19 LOC_Os08g10310.3 672 216 238 PF00560.25 LRR_1
20 LOC_Os08g10310.3 672 240 262 PF00560.25 LRR_1
21 LOC_Os08g10310.3 672 288 311 PF00560.25 LRR_1
22 LOC_Os08g10310.3 672 313 335 PF00560.25 LRR_1
23 LOC_Os08g10310.3 672 359 382 PF00560.25 LRR_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  2
N22 Root FC
  -7
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  2
IR64 Root FC
  -7

Functional details
Molecular Function
Not found
1 GO:0016301 kinase activity (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007068 ethylene regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQCU110 spikelet fertility
7 AQCU161 spikelet number
8 AQFW126 spikelet fertility
9 AQEO022 100-seed weight
10 AQA009 tiller number
11 CQAP1 scent
12 CQN20 soluble protein content
13 CQN37 leaf senescence
14 CQN38 leaf senescence
15 AQEN008 blast disease resistance
16 AQEN015 blast disease resistance
17 CQAS102 spikelet number
18 CQAS103 seed number
19 CQAS104 yield
20 CQAS92 plant height
21 CQAS93 days to heading
22 CQAS94 days to maturity
23 CQAS97 spikelet number
24 CQAS98 spikelet density
25 CQAS99 seed number
26 AQHE039 root thickness
27 AQEJ086 root activity
28 CQAO14 primary branch
29 AQCF042 filled grain number
30 AQCF043 spikelet number
31 AQDQ051 spikelet number
32 AQDQ052 plant height
33 AQDQ053 panicle length
34 AQDQ054 panicle length
35 CQAX35 plant height
36 CQAS96 panicle number
37 AQBK001 days to heading
38 CQAS100 seed set percent
39 CQAS101 1000-seed weight
40 CQAS95 panicle length
41 CQC6 days to heading
42 AQGD022 awn length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Jeong Jin Seo; Kim Youn Shic; Baek Kwang Hun; Jung Harin; Ha Sun-Hwa; Do Choi Yang; Kim Minkyun; Reuzeau Christophe; Kim Ju-Kon; Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiology 2010:153
PMID [20335401]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India