Rice gene details
Searching for LOC_Os08g10630 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g10630.1 397 56 393 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  -3
N22 Root FC
  18
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQCU110 spikelet fertility
7 AQCU161 spikelet number
8 AQFW126 spikelet fertility
9 AQEO022 100-seed weight
10 AQA009 tiller number
11 CQAP1 scent
12 CQN20 soluble protein content
13 CQN37 leaf senescence
14 CQN38 leaf senescence
15 AQEN008 blast disease resistance
16 AQEN015 blast disease resistance
17 CQAS102 spikelet number
18 CQAS103 seed number
19 CQAS104 yield
20 CQAS92 plant height
21 CQAS93 days to heading
22 CQAS94 days to maturity
23 CQAS97 spikelet number
24 CQAS98 spikelet density
25 CQAS99 seed number
26 AQHE039 root thickness
27 AQEJ086 root activity
28 CQAO14 primary branch
29 AQCF042 filled grain number
30 AQCF043 spikelet number
31 AQDQ051 spikelet number
32 AQDQ052 plant height
33 AQDQ053 panicle length
34 AQDQ054 panicle length
35 CQAX35 plant height
36 CQAS96 panicle number
37 AQBK001 days to heading
38 CQAS100 seed set percent
39 CQAS101 1000-seed weight
40 CQAS95 panicle length
41 CQC6 days to heading
42 AQGD022 awn length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India