Rice gene details
Searching for LOC_Os08g14070 [LYR motif containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g14070.1 91 5 69 PF05347.7 Complex1_LYR
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  5
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009412 response to heavy metal  
4 GO:0010039 response to iron ion  
5 GO:0010044 response to aluminum ion  
6 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000008 methyl viologen (MV) (+)
3 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQCU110 spikelet fertility
7 AQCU161 spikelet number
8 AQFW126 spikelet fertility
9 AQEO022 100-seed weight
10 AQA009 tiller number
11 CQAP1 scent
12 CQN20 soluble protein content
13 CQN37 leaf senescence
14 CQN38 leaf senescence
15 AQEN008 blast disease resistance
16 AQEN015 blast disease resistance
17 CQAS102 spikelet number
18 CQAS103 seed number
19 CQAS104 yield
20 CQAS92 plant height
21 CQAS93 days to heading
22 CQAS94 days to maturity
23 CQAS97 spikelet number
24 CQAS98 spikelet density
25 CQAS99 seed number
26 AQCF042 filled grain number
27 AQCF043 spikelet number
28 AQDQ051 spikelet number
29 AQDQ052 plant height
30 AQDQ053 panicle length
31 AQDQ054 panicle length
32 CQAX35 plant height
33 CQAS96 panicle number
34 AQBK001 days to heading
35 CQAS100 seed set percent
36 CQAS101 1000-seed weight
37 CQAS95 panicle length
38 CQC6 days to heading
39 AQGD022 awn length
40 CQE65 plant height
41 CQE66 plant height
42 AQGI172 biomass yield
43 CQAJ2 yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India