Rice gene details
Searching for LOC_Os08g20544 [expressed protein ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g20544.1 423 124 208 PF00168.22 C2
2 LOC_Os08g20544.1 423 295 377 PF00168.22 C2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  8
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)
2 GO:0005575 cellular_component (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQEO022 100-seed weight
7 AQA009 tiller number
8 CQAP1 scent
9 CQN20 soluble protein content
10 CQN37 leaf senescence
11 CQN38 leaf senescence
12 AQEN008 blast disease resistance
13 AQEN015 blast disease resistance
14 CQAS102 spikelet number
15 CQAS103 seed number
16 CQAS104 yield
17 CQAS92 plant height
18 CQAS93 days to heading
19 CQAS94 days to maturity
20 CQAS97 spikelet number
21 CQAS98 spikelet density
22 CQAS99 seed number
23 AQCF042 filled grain number
24 AQCF043 spikelet number
25 AQDQ051 spikelet number
26 AQDQ052 plant height
27 AQDQ053 panicle length
28 AQDQ054 panicle length
29 CQAX35 plant height
30 CQAS96 panicle number
31 AQBK001 days to heading
32 CQAS100 seed set percent
33 CQAS101 1000-seed weight
34 CQAS95 panicle length
35 CQC6 days to heading
36 AQGD022 awn length
37 CQE65 plant height
38 CQE66 plant height
39 AQGI172 biomass yield
40 CQAJ2 yield
41 AQAL029 root thickness
42 AQFW094 leaf length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India