Rice gene details
Searching for LOC_Os08g23100 [cyclase family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g23100.1 271 56 256 PF04199.5 Cyclase
2 LOC_Os08g23100.2 271 56 256 PF04199.5 Cyclase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED011 days to maturity
2 CQX4 days to heading
3 CQN39 leaf senescence
4 CQAU2 spikelet number
5 AQBK019 days to heading
6 AQEO022 100-seed weight
7 AQA009 tiller number
8 CQAP1 scent
9 CQN20 soluble protein content
10 CQN37 leaf senescence
11 CQN38 leaf senescence
12 AQEN008 blast disease resistance
13 AQEN015 blast disease resistance
14 CQAS102 spikelet number
15 CQAS103 seed number
16 CQAS104 yield
17 CQAS92 plant height
18 CQAS93 days to heading
19 CQAS94 days to maturity
20 CQAS97 spikelet number
21 CQAS98 spikelet density
22 CQAS99 seed number
23 AQCF042 filled grain number
24 AQCF043 spikelet number
25 AQDQ051 spikelet number
26 AQDQ052 plant height
27 AQDQ053 panicle length
28 AQDQ054 panicle length
29 CQAX35 plant height
30 CQAS96 panicle number
31 AQBK001 days to heading
32 CQAS100 seed set percent
33 CQAS101 1000-seed weight
34 CQAS95 panicle length
35 CQC6 days to heading
36 AQGD022 awn length
37 CQE65 plant height
38 CQE66 plant height
39 AQGI172 biomass yield
40 CQAJ2 yield
41 AQAL029 root thickness
42 AQFW094 leaf length
43 AQBJ026 primary branch
44 AQBJ029 primary branch

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000251 pistil/stamen primordium differentiation stage (-)
2 MCP:1000520 young inflorescence stage (-)
3 PO:0007073 2 formation of axillary shoot (-)
4 PO:0007115 LP.04 four leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006012 leaf collar (-)
2 PO:0009005 root (-)
3 PO:0009006 shoot system (-)
4 PO:0009029 stamen (-)
5 PO:0009039 glume (-)
6 PO:0009047 stem (-)
7 PO:0009049 inflorescence (-)
8 PO:0009089 endosperm (-)
9 PO:0020103 flag leaf (-)
10 PO:0020104 leaf sheath (-)
11 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Qin Yonghua; Shen Xin; Wang Nili; Ding Xipeng; Characterization of a novel cyclase-like gene family involved in controlling stress tolerance in rice. Journal of plant physiology 2015:181
PMID [25974367]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India