Rice gene details
Searching for LOC_Os08g25710 [CSLD3 - cellulose synthase-like family D, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g25710.1 1116 281 1111 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  5

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0009856 pollination (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0005975 carbohydrate metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005794 Golgi apparatus (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 TRNA-CHARGING-PWY tRNA charging pathway

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX4 days to heading
2 CQN39 leaf senescence
3 CQAU2 spikelet number
4 AQBK019 days to heading
5 CQAP1 scent
6 CQN20 soluble protein content
7 CQN37 leaf senescence
8 CQN38 leaf senescence
9 AQEN008 blast disease resistance
10 AQEN015 blast disease resistance
11 CQAS102 spikelet number
12 CQAS103 seed number
13 CQAS104 yield
14 CQAS92 plant height
15 CQAS93 days to heading
16 CQAS94 days to maturity
17 CQAS97 spikelet number
18 CQAS98 spikelet density
19 CQAS99 seed number
20 AQCF042 filled grain number
21 AQCF043 spikelet number
22 AQDQ051 spikelet number
23 AQDQ052 plant height
24 AQDQ053 panicle length
25 AQDQ054 panicle length
26 CQAX35 plant height
27 CQAS96 panicle number
28 AQBK001 days to heading
29 CQAS100 seed set percent
30 CQAS101 1000-seed weight
31 CQAS95 panicle length
32 CQC6 days to heading
33 AQGD022 awn length
34 CQE65 plant height
35 CQE66 plant height
36 AQGI172 biomass yield
37 CQAJ2 yield
38 AQAL029 root thickness
39 AQFW094 leaf length
40 AQBJ026 primary branch
41 AQBJ029 primary branch
42 AQAP031 brown planthopper resistance
43 AQCU048 spikelet fertility
44 AQCU067 plant height
45 AQFW004 days to heading
46 AQFW040 days to heading
47 AQFW051 leaf width
48 AQFW056 days to heading
49 AQFW065 leaf width
50 AQFW080 days to heading
51 AQCE030 primary branch length
52 AQCE039 primary branch
53 AQFR029 seedling vigor
54 AQAP008 brown planthopper resistance
55 AQAP009 brown planthopper resistance
56 AQAP010 brown planthopper resistance
57 AQAP033 brown planthopper resistance
58 AQCU113 days to heading
59 AQCU174 spikelet fertility
60 AQCU224 leaf width
61 AQFW128 spikelet fertility
62 AQFV020 seedling vigor
63 AQFV021 seedling vigor
64 AQFV022 seedling vigor
65 AQFW035 leaf width
66 AQA014 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ding Zhengquan; Lin Zefeng; Li Qin; Wu Hao; Xiang Chunyan; Wang Jianfei; DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.). Biochemical and biophysical research communications 2015:457
PMID [25522878]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India