Rice gene details
Searching for LOC_Os08g27040 [lipid phosphatase protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g27040.1 311 99 249 PF01569.13 PAP2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CHLOROPHYLL-SYN chlorophyllide a biosynthesis
2 PHOSLIPSYN2-PWY phospholipid biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX4 days to heading
2 CQN39 leaf senescence
3 AQBK019 days to heading
4 CQAP1 scent
5 CQN20 soluble protein content
6 CQN37 leaf senescence
7 CQN38 leaf senescence
8 AQEN008 blast disease resistance
9 AQEN015 blast disease resistance
10 CQAS102 spikelet number
11 CQAS103 seed number
12 CQAS104 yield
13 CQAS92 plant height
14 CQAS93 days to heading
15 CQAS94 days to maturity
16 CQAS97 spikelet number
17 CQAS98 spikelet density
18 CQAS99 seed number
19 AQCF042 filled grain number
20 AQCF043 spikelet number
21 AQDQ051 spikelet number
22 AQDQ052 plant height
23 AQDQ053 panicle length
24 AQDQ054 panicle length
25 CQAX35 plant height
26 CQAS96 panicle number
27 AQBK001 days to heading
28 CQAS100 seed set percent
29 CQAS101 1000-seed weight
30 CQAS95 panicle length
31 CQC6 days to heading
32 AQGD022 awn length
33 CQE65 plant height
34 CQE66 plant height
35 AQGI172 biomass yield
36 CQAJ2 yield
37 AQAL029 root thickness
38 AQFW094 leaf length
39 AQBJ026 primary branch
40 AQBJ029 primary branch
41 AQAP031 brown planthopper resistance
42 AQCU048 spikelet fertility
43 AQCU067 plant height
44 AQFW004 days to heading
45 AQFW040 days to heading
46 AQFW051 leaf width
47 AQFW056 days to heading
48 AQFW065 leaf width
49 AQFW080 days to heading
50 AQCE030 primary branch length
51 AQCE039 primary branch
52 AQFR029 seedling vigor
53 AQAP008 brown planthopper resistance
54 AQAP009 brown planthopper resistance
55 AQAP010 brown planthopper resistance
56 AQAP033 brown planthopper resistance
57 AQCU113 days to heading
58 AQCU174 spikelet fertility
59 AQCU224 leaf width
60 AQFW128 spikelet fertility
61 AQFV020 seedling vigor
62 AQFV021 seedling vigor
63 AQFV022 seedling vigor
64 AQFW035 leaf width
65 AQA014 tiller number
66 AQDR014 grain number
67 AQDR019 grain yield per panicle
68 AQDI005 hybrid incompatibilty
69 CQAR33 days to heading
70 CQAR34 plant height
71 CQAR35 spikelet number
72 CQB29 1000-grain weight
73 AQFA019 brown rice protein
74 AQBS019 plant height
75 AQBS026 panicle length
76 AQBS046 grain number
77 AQBS067 grain yield per panicle

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India