Rice gene details
Searching for LOC_Os08g32930 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os08g32930.1 187 7 30 seg
2 LOC_Os08g32930.1 187 42 48 seg
3 LOC_Os08g32930.2 158 7 30 seg
4 LOC_Os08g32930.2 158 42 48 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -7
N22 Root FC
 
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
 

Functional details
Molecular Function
Not found
Biological process
Not found
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 EO:0007404 drought environment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN39 leaf senescence
2 AQBK019 days to heading
3 CQAP1 scent
4 CQN20 soluble protein content
5 CQN37 leaf senescence
6 CQN38 leaf senescence
7 CQAS102 spikelet number
8 CQAS103 seed number
9 CQAS104 yield
10 CQAS92 plant height
11 CQAS93 days to heading
12 CQAS94 days to maturity
13 CQAS97 spikelet number
14 CQAS98 spikelet density
15 CQAS99 seed number
16 AQCF042 filled grain number
17 AQCF043 spikelet number
18 AQDQ051 spikelet number
19 AQDQ052 plant height
20 AQDQ053 panicle length
21 AQDQ054 panicle length
22 CQAX35 plant height
23 CQAS96 panicle number
24 AQBK001 days to heading
25 CQAS100 seed set percent
26 CQAS101 1000-seed weight
27 CQAS95 panicle length
28 CQC6 days to heading
29 AQGD022 awn length
30 CQE65 plant height
31 CQE66 plant height
32 AQAL029 root thickness
33 AQFW094 leaf length
34 AQAP031 brown planthopper resistance
35 AQCU048 spikelet fertility
36 AQCU067 plant height
37 AQFW004 days to heading
38 AQFW040 days to heading
39 AQFW051 leaf width
40 AQFW056 days to heading
41 AQFW065 leaf width
42 AQFW080 days to heading
43 AQCE030 primary branch length
44 AQCE039 primary branch
45 AQFR029 seedling vigor
46 AQAP008 brown planthopper resistance
47 AQAP009 brown planthopper resistance
48 AQAP010 brown planthopper resistance
49 AQAP033 brown planthopper resistance
50 AQCU113 days to heading
51 AQCU174 spikelet fertility
52 AQCU224 leaf width
53 AQFW128 spikelet fertility
54 AQFV020 seedling vigor
55 AQFV021 seedling vigor
56 AQFV022 seedling vigor
57 AQFW035 leaf width
58 AQBS019 plant height
59 AQBS026 panicle length
60 AQBS046 grain number
61 AQBS067 grain yield per panicle
62 CQE67 plant height
63 AQBC065 tiller angle
64 AQBC066 tiller angle
65 AQBC067 tiller angle
66 AQBC068 tiller angle
67 AQDP005 iron sensitivity
68 AQEA262 days to heading
69 AQEA263 days to heading
70 AQEA264 days to heading
71 AQEA265 days to heading
72 AQEA266 days to heading
73 AQEA267 days to heading
74 AQEA268 days to heading
75 AQEA269 days to heading
76 AQEA270 days to heading
77 AQEA271 days to heading
78 AQEA272 days to heading
79 CQK10 panicle number
80 CQL8 relative root length
81 CQL9 relative root length
82 AQFF044 spikelet sterility
83 CQAV6 osmotic adjustment capacity
84 CQAV7 osmotic adjustment capacity
85 CQAV9 osmotic adjustment capacity
86 CQAW25 tiller number
87 CQAW26 root number
88 AQDQ055 filled grain number
89 AQEJ036 leaf area
90 AQEJ038 leaf area
91 AQEJ040 leaf width
92 AQEJ068 leaf width
93 AQEJ070 leaf width
94 AQGB056 chalkiness of endosperm
95 AQGB057 chalkiness of endosperm
96 AQGB058 chalkiness of endosperm
97 AQGB059 chalkiness of endosperm
98 AQGB060 chalkiness of endosperm
99 AQGB061 chalkiness of endosperm
100 AQGB062 chalkiness of endosperm
101 AQGB063 chalkiness of endosperm
102 AQGB076 chalkiness of endosperm
103 AQGB077 chalkiness of endosperm
104 AQGB078 chalkiness of endosperm
105 AQGB079 chalkiness of endosperm
106 AQGB080 chalkiness of endosperm
107 AQGB081 chalkiness of endosperm
108 AQGB082 chalkiness of endosperm
109 AQGB083 chalkiness of endosperm
110 AQGB088 chalkiness of endosperm
111 AQGB089 chalkiness of endosperm
112 AQGB090 chalkiness of endosperm
113 AQGB091 chalkiness of endosperm
114 AQGB092 chalkiness of endosperm
115 AQGB093 chalkiness of endosperm
116 AQGB094 chalkiness of endosperm
117 AQGB095 chalkiness of endosperm
118 AQD023 leaf drying
119 AQDY109 panicle length
120 AQFT004 osmotic adjustment capacity
121 CQA24 vegetative growth time
122 CQA25 reproductive growth time
123 AQF003 grain shattering
124 AQF015 seed dormancy
125 AQF049 awn length
126 AQF129 cold tolerance
127 CQE68 photosynthetic ability
128 CQF9 soluble protein content
129 CQF11 rubisco content
130 AQZ004 root length
131 AQZ008 relative root length
132 CQAR36 days to heading
133 CQAR37 plant height
134 AQGI148 biomass yield
135 AQGI183 biomass yield
136 AQGI269 total biomass yield
137 CQR15 flour color
138 AQBZ014 plant height
139 CQR9 flour color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007134 A vegetative growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166
PMID [25209982]


Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150
PMID [19429605]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India