Rice gene details
Searching for LOC_Os08g33370 [14-3-3 protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g33370.1 257 3 240 PF00244.12 14/03/03
2 LOC_Os08g33370.2 257 3 240 PF00244.12 14/03/03
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009633 drought tolerance  
5 GO:0009651 response to salt stress  
6 GO:0009723 response to ethylene stimulus  
7 GO:0040008 regulation of growth  
8 GO:0042542 response to hydrogen peroxide  
9 GO:0046686 response to cadmium ion  
10 GO:0046688 response to copper ion  
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)
2 GO:0005635 nuclear envelope (RGAP)
3 GO:0005737 cytoplasm (RGAP)
4 GO:0005886 plasma membrane (RGAP)
5 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007173 warm/hot temperature regimen (+)
6 EO:0007187 salicylic acid regimen (+)
7 EO:0007198 water environment (+)
8 EO:0007223 cadmium chloride (+)
9 EO:0007332 cold air temperature regimen (+)
10 EO:0007383 watering regimen (+)
11 EO:0007404 drought environment (+)
12 EO:0007415 hydrogen peroxide (+)
13 EO:0007527 cupric sulfate (+)
14 MCE:1000013 ethephon (+)
15 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN39 leaf senescence
2 AQBK019 days to heading
3 CQAP1 scent
4 CQN20 soluble protein content
5 CQN37 leaf senescence
6 CQN38 leaf senescence
7 CQAS102 spikelet number
8 CQAS103 seed number
9 CQAS104 yield
10 CQAS92 plant height
11 CQAS93 days to heading
12 CQAS94 days to maturity
13 CQAS97 spikelet number
14 CQAS98 spikelet density
15 CQAS99 seed number
16 AQCF042 filled grain number
17 AQCF043 spikelet number
18 AQDQ051 spikelet number
19 AQDQ052 plant height
20 AQDQ053 panicle length
21 AQDQ054 panicle length
22 CQAX35 plant height
23 CQAS96 panicle number
24 AQBK001 days to heading
25 CQAS100 seed set percent
26 CQAS101 1000-seed weight
27 CQAS95 panicle length
28 CQC6 days to heading
29 AQGD022 awn length
30 CQE65 plant height
31 CQE66 plant height
32 AQFW094 leaf length
33 AQCE030 primary branch length
34 AQCE039 primary branch
35 AQFR029 seedling vigor
36 AQAP008 brown planthopper resistance
37 AQAP009 brown planthopper resistance
38 AQAP010 brown planthopper resistance
39 AQAP033 brown planthopper resistance
40 AQCU113 days to heading
41 AQCU174 spikelet fertility
42 AQCU224 leaf width
43 AQFW128 spikelet fertility
44 AQFV020 seedling vigor
45 AQFV021 seedling vigor
46 AQFV022 seedling vigor
47 AQFW035 leaf width
48 AQBS019 plant height
49 AQBS026 panicle length
50 AQBS046 grain number
51 AQBS067 grain yield per panicle
52 CQE67 plant height
53 AQBC065 tiller angle
54 AQBC066 tiller angle
55 AQBC067 tiller angle
56 AQBC068 tiller angle
57 AQDP005 iron sensitivity
58 AQEA262 days to heading
59 AQEA263 days to heading
60 AQEA264 days to heading
61 AQEA265 days to heading
62 AQEA266 days to heading
63 AQEA267 days to heading
64 AQEA268 days to heading
65 AQEA269 days to heading
66 AQEA270 days to heading
67 AQEA271 days to heading
68 AQEA272 days to heading
69 CQK10 panicle number
70 CQL8 relative root length
71 CQL9 relative root length
72 AQFF044 spikelet sterility
73 CQAV6 osmotic adjustment capacity
74 CQAV7 osmotic adjustment capacity
75 CQAV9 osmotic adjustment capacity
76 CQAW25 tiller number
77 CQAW26 root number
78 AQDQ055 filled grain number
79 AQEJ036 leaf area
80 AQEJ038 leaf area
81 AQEJ040 leaf width
82 AQEJ068 leaf width
83 AQEJ070 leaf width
84 AQGB056 chalkiness of endosperm
85 AQGB057 chalkiness of endosperm
86 AQGB058 chalkiness of endosperm
87 AQGB059 chalkiness of endosperm
88 AQGB060 chalkiness of endosperm
89 AQGB061 chalkiness of endosperm
90 AQGB062 chalkiness of endosperm
91 AQGB063 chalkiness of endosperm
92 AQGB076 chalkiness of endosperm
93 AQGB077 chalkiness of endosperm
94 AQGB078 chalkiness of endosperm
95 AQGB079 chalkiness of endosperm
96 AQGB080 chalkiness of endosperm
97 AQGB081 chalkiness of endosperm
98 AQGB082 chalkiness of endosperm
99 AQGB083 chalkiness of endosperm
100 AQGB088 chalkiness of endosperm
101 AQGB089 chalkiness of endosperm
102 AQGB090 chalkiness of endosperm
103 AQGB091 chalkiness of endosperm
104 AQGB092 chalkiness of endosperm
105 AQGB093 chalkiness of endosperm
106 AQGB094 chalkiness of endosperm
107 AQGB095 chalkiness of endosperm
108 CQA24 vegetative growth time
109 CQA25 reproductive growth time
110 AQF003 grain shattering
111 AQF015 seed dormancy
112 AQF049 awn length
113 AQF129 cold tolerance
114 CQE68 photosynthetic ability
115 CQF9 soluble protein content
116 CQF11 rubisco content
117 CQAR36 days to heading
118 CQAR37 plant height
119 AQBZ014 plant height
120 CQR9 flour color
121 AQDU003 cold tolerance
122 AQDU012 cold tolerance
123 CQAA12 leaf necrosis tolerance
124 CQAA3 leaf rolloing tolerance
125 AQE082 panicle number
126 AQGS035 grain yield
127 AQGS038 grain yield
128 EQC0032 seed shattering
129 AQEE003 seed density
130 AQBM003 callus induction
131 AQDJ003 plant height
132 AQDJ015 internode length
133 CQB30 plant height
134 AQO017 root to shoot ratio
135 AQO025 root to shoot ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000338 15 days post-fertilization stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0007041 inflorescence emergence from flag leaf sheath (+)
5 PO:0007617 5 post anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006340 adult leaf (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0009039 glume (+)
7 PO:0009047 stem (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000057 relative fresh weight (+)
2 MCT:1000208 leaf whitening (+)
3 TO:0000085 leaf rolling (+)
4 TO:0002681 leaf curling (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ho Shin-Lon; Huang Li-Fen; Lu Chung-An; He Siou-Luan; Wang Chun-Chin; Yu Sheng-Ping; Chen Jychian; Yu Su-May; Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings. Plant molecular biology 2013:
PMID [23329372]


2  Yao Yuan; Du Ying; Jiang Lin; Liu Jin-Yuan; Molecular analysis and expression patterns of the 14-3-3 gene family from Oryza sativa. Journal of Biochemistry and Molecular Biology 2007:40
PMID [17562286]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India