Rice gene details
Searching for LOC_Os08g34170 [CAF1 family ribonuclease containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g34170.1 289 19 252 PF04857.12 CAF1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004518 nuclease activity (RGAP)
2 GO:0003676 nucleic acid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN39 leaf senescence
2 AQBK019 days to heading
3 CQAP1 scent
4 CQN20 soluble protein content
5 CQN37 leaf senescence
6 CQN38 leaf senescence
7 CQAS102 spikelet number
8 CQAS103 seed number
9 CQAS104 yield
10 CQAS92 plant height
11 CQAS93 days to heading
12 CQAS94 days to maturity
13 CQAS97 spikelet number
14 CQAS98 spikelet density
15 CQAS99 seed number
16 AQCF042 filled grain number
17 AQCF043 spikelet number
18 AQDQ051 spikelet number
19 AQDQ052 plant height
20 AQDQ053 panicle length
21 AQDQ054 panicle length
22 CQAX35 plant height
23 CQAS96 panicle number
24 AQBK001 days to heading
25 CQAS100 seed set percent
26 CQAS101 1000-seed weight
27 CQAS95 panicle length
28 CQC6 days to heading
29 AQGD022 awn length
30 CQE65 plant height
31 CQE66 plant height
32 AQFW094 leaf length
33 AQCE030 primary branch length
34 AQCE039 primary branch
35 AQFR029 seedling vigor
36 AQAP008 brown planthopper resistance
37 AQAP009 brown planthopper resistance
38 AQAP010 brown planthopper resistance
39 AQAP033 brown planthopper resistance
40 AQCU113 days to heading
41 AQCU174 spikelet fertility
42 AQCU224 leaf width
43 AQFW128 spikelet fertility
44 AQFV020 seedling vigor
45 AQFV021 seedling vigor
46 AQFV022 seedling vigor
47 AQFW035 leaf width
48 AQBS019 plant height
49 AQBS026 panicle length
50 AQBS046 grain number
51 AQBS067 grain yield per panicle
52 CQE67 plant height
53 AQBC065 tiller angle
54 AQBC066 tiller angle
55 AQBC067 tiller angle
56 AQBC068 tiller angle
57 AQDP005 iron sensitivity
58 AQEA262 days to heading
59 AQEA263 days to heading
60 AQEA264 days to heading
61 AQEA265 days to heading
62 AQEA266 days to heading
63 AQEA267 days to heading
64 AQEA268 days to heading
65 AQEA269 days to heading
66 AQEA270 days to heading
67 AQEA271 days to heading
68 AQEA272 days to heading
69 CQK10 panicle number
70 CQL8 relative root length
71 CQL9 relative root length
72 AQFF044 spikelet sterility
73 CQAV6 osmotic adjustment capacity
74 CQAV7 osmotic adjustment capacity
75 CQAV9 osmotic adjustment capacity
76 CQAW25 tiller number
77 CQAW26 root number
78 AQDQ055 filled grain number
79 AQEJ036 leaf area
80 AQEJ038 leaf area
81 AQEJ040 leaf width
82 AQEJ068 leaf width
83 AQEJ070 leaf width
84 AQGB056 chalkiness of endosperm
85 AQGB057 chalkiness of endosperm
86 AQGB058 chalkiness of endosperm
87 AQGB059 chalkiness of endosperm
88 AQGB060 chalkiness of endosperm
89 AQGB061 chalkiness of endosperm
90 AQGB062 chalkiness of endosperm
91 AQGB063 chalkiness of endosperm
92 AQGB076 chalkiness of endosperm
93 AQGB077 chalkiness of endosperm
94 AQGB078 chalkiness of endosperm
95 AQGB079 chalkiness of endosperm
96 AQGB080 chalkiness of endosperm
97 AQGB081 chalkiness of endosperm
98 AQGB082 chalkiness of endosperm
99 AQGB083 chalkiness of endosperm
100 AQGB088 chalkiness of endosperm
101 AQGB089 chalkiness of endosperm
102 AQGB090 chalkiness of endosperm
103 AQGB091 chalkiness of endosperm
104 AQGB092 chalkiness of endosperm
105 AQGB093 chalkiness of endosperm
106 AQGB094 chalkiness of endosperm
107 AQGB095 chalkiness of endosperm
108 CQA24 vegetative growth time
109 CQA25 reproductive growth time
110 AQF003 grain shattering
111 AQF015 seed dormancy
112 AQF049 awn length
113 AQF129 cold tolerance
114 CQE68 photosynthetic ability
115 CQF9 soluble protein content
116 CQF11 rubisco content
117 CQAR36 days to heading
118 CQAR37 plant height
119 AQBZ014 plant height
120 CQR9 flour color
121 AQE082 panicle number
122 AQGS035 grain yield
123 AQGS038 grain yield
124 EQC0032 seed shattering
125 AQEE003 seed density
126 AQBM003 callus induction
127 AQDJ003 plant height
128 AQDJ015 internode length
129 CQB30 plant height
130 AQO017 root to shoot ratio
131 AQO025 root to shoot ratio
132 AQDX012 osmotic adjustment capacity
133 AQEI067 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001054 4 leaf senescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0009051 spikelet (+)
5 PO:0020040 leaf base (+)
6 PO:0020104 leaf sheath (+)
7 PO:0020122 inflorescence axis (+)
8 PO:0025034 leaf (+)
9 PO:0025142 leaf tip (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chou Wei-Lun; Huang Li-Fen; Fang Jhen-Cheng; Yeh Ching-Hui; Hong Chwan-Yang; Wu Shaw-Jye; Lu Chung-An; Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa. Plant molecular biology 2014:85
PMID [24805883]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India