Rice gene details
Searching for LOC_Os08g35740 [12-oxophytodienoate reductase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g35740.1 395 15 365 PF00724.12 Oxidored_FMN
2 LOC_Os08g35740.2 348 15 318 PF00724.12 Oxidored_FMN
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016629 12-oxophytodienoate reductase activity  
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009414 response to water deprivation  
3 GO:0009611 response to wounding  
4 GO:0009628 response to abiotic stimulus  
5 GO:0009695 jasmonic acid biosynthetic process  
6 GO:0006950 response to stress (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006629 lipid metabolic process (RGAP)
11 GO:0008152 metabolic process (RGAP)
12 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005777 peroxisome  
2 GO:0005777 peroxisome (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007235 silicon nutrient regimen (+)
3 EO:0007373 mechanical damage (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY66-21 oxidative ethanol degradation I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQAP1 scent
3 CQN37 leaf senescence
4 CQN38 leaf senescence
5 CQAS102 spikelet number
6 CQAS103 seed number
7 CQAS104 yield
8 CQAS92 plant height
9 CQAS93 days to heading
10 CQAS94 days to maturity
11 CQAS97 spikelet number
12 CQAS98 spikelet density
13 CQAS99 seed number
14 AQDQ051 spikelet number
15 AQDQ052 plant height
16 AQDQ053 panicle length
17 AQDQ054 panicle length
18 CQAX35 plant height
19 CQAS96 panicle number
20 AQBK001 days to heading
21 CQAS100 seed set percent
22 CQAS101 1000-seed weight
23 CQAS95 panicle length
24 CQC6 days to heading
25 AQAP008 brown planthopper resistance
26 AQAP009 brown planthopper resistance
27 AQAP010 brown planthopper resistance
28 AQAP033 brown planthopper resistance
29 AQCU113 days to heading
30 AQCU174 spikelet fertility
31 AQCU224 leaf width
32 AQFW128 spikelet fertility
33 AQFV020 seedling vigor
34 AQFV021 seedling vigor
35 AQFV022 seedling vigor
36 AQFW035 leaf width
37 AQBS019 plant height
38 AQBS026 panicle length
39 AQBS046 grain number
40 AQBS067 grain yield per panicle
41 CQE67 plant height
42 AQFF044 spikelet sterility
43 CQAV6 osmotic adjustment capacity
44 CQAV7 osmotic adjustment capacity
45 CQAV9 osmotic adjustment capacity
46 CQAW25 tiller number
47 CQAW26 root number
48 AQDQ055 filled grain number
49 AQGB056 chalkiness of endosperm
50 AQGB057 chalkiness of endosperm
51 AQGB058 chalkiness of endosperm
52 AQGB059 chalkiness of endosperm
53 AQGB060 chalkiness of endosperm
54 AQGB061 chalkiness of endosperm
55 AQGB062 chalkiness of endosperm
56 AQGB063 chalkiness of endosperm
57 AQGB076 chalkiness of endosperm
58 AQGB077 chalkiness of endosperm
59 AQGB078 chalkiness of endosperm
60 AQGB079 chalkiness of endosperm
61 AQGB080 chalkiness of endosperm
62 AQGB081 chalkiness of endosperm
63 AQGB082 chalkiness of endosperm
64 AQGB083 chalkiness of endosperm
65 AQGB088 chalkiness of endosperm
66 AQGB089 chalkiness of endosperm
67 AQGB090 chalkiness of endosperm
68 AQGB091 chalkiness of endosperm
69 AQGB092 chalkiness of endosperm
70 AQGB093 chalkiness of endosperm
71 AQGB094 chalkiness of endosperm
72 AQGB095 chalkiness of endosperm
73 AQF003 grain shattering
74 AQF015 seed dormancy
75 AQF049 awn length
76 AQF129 cold tolerance
77 CQE68 photosynthetic ability
78 CQF9 soluble protein content
79 CQF11 rubisco content
80 AQBZ014 plant height
81 CQR9 flour color
82 EQC0032 seed shattering
83 AQEE003 seed density
84 AQO017 root to shoot ratio
85 AQO025 root to shoot ratio
86 AQDX013 osmotic adjustment capacity
87 AQFF069 plant height
88 AQFF072 plant height
89 AQFF013 total biomass yield
90 AQFF043 spikelet sterility
91 AQGS036 grain yield
92 AQHR052 plant height
93 AQFE100 plant height
94 AQFF057 panicle number
95 AQFF063 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009006 shoot system (+)
4 PO:0009025 vascular leaf (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000437 male sterility (-)
2 TO:0002668 jasmonic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kim Yoon-Ha; Khan Abdul Latif; Waqas Muhammad; Jeong Hee-Jeong; Kim Duk-Hwan; Shin Jeong Sheop; Kim Jong-Guk; Yeon Myung-Hun; Lee In-Jung; Regulation of jasmonic acid biosynthesis by silicon application during physical injury to Oryza sativa L. Journal of plant research 2014:127
PMID [24840865]


2  Yoshii Motoyasu; Yamazaki Muneo; Rakwal Randeep; Kishi-Kaboshi Mitsuko; Miyao Akio; Hirochika Hirohiko; The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling. The Plant Journal 2010:61
PMID [20015061]


3  Tani Tomoyuki; Sobajima Hiroyuki; Okada Kazunori; Chujo Tetsuya; Arimura Shin-Ichi; Tsutsumi Nobuhiro; Nishimura Mikio; Seto Hideharu; Nojiri Hideaki; Yamane Hisakazu; Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice. Planta 2008:227
PMID [17938955]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India