Rice gene details
Searching for LOC_Os08g36860 [cytochrome P450, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g36860.1 511 52 489 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  38
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  7

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0019825 oxygen binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0009749 response to glucose stimulus  
5 GO:0030912 response to deep water  
6 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007383 watering regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000010 submergence stress (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000044 mannitol (+)
9 MCE:1000241 D-glucose (+)
10 MCE:1000242 D-allose (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQAP1 scent
3 CQN37 leaf senescence
4 CQN38 leaf senescence
5 CQAS102 spikelet number
6 CQAS103 seed number
7 CQAS104 yield
8 CQAS92 plant height
9 CQAS93 days to heading
10 CQAS94 days to maturity
11 CQAS97 spikelet number
12 CQAS98 spikelet density
13 CQAS99 seed number
14 AQDQ051 spikelet number
15 AQDQ052 plant height
16 AQDQ053 panicle length
17 AQDQ054 panicle length
18 CQAX35 plant height
19 CQAS96 panicle number
20 AQBK001 days to heading
21 CQAS100 seed set percent
22 CQAS101 1000-seed weight
23 CQAS95 panicle length
24 CQC6 days to heading
25 AQFV020 seedling vigor
26 AQFV021 seedling vigor
27 AQFV022 seedling vigor
28 AQFW035 leaf width
29 AQBS019 plant height
30 AQBS026 panicle length
31 AQBS046 grain number
32 AQBS067 grain yield per panicle
33 AQFF044 spikelet sterility
34 CQAV6 osmotic adjustment capacity
35 CQAV7 osmotic adjustment capacity
36 CQAV9 osmotic adjustment capacity
37 CQAW25 tiller number
38 CQAW26 root number
39 AQDQ055 filled grain number
40 AQGB056 chalkiness of endosperm
41 AQGB057 chalkiness of endosperm
42 AQGB058 chalkiness of endosperm
43 AQGB059 chalkiness of endosperm
44 AQGB060 chalkiness of endosperm
45 AQGB061 chalkiness of endosperm
46 AQGB062 chalkiness of endosperm
47 AQGB063 chalkiness of endosperm
48 AQGB076 chalkiness of endosperm
49 AQGB077 chalkiness of endosperm
50 AQGB078 chalkiness of endosperm
51 AQGB079 chalkiness of endosperm
52 AQGB080 chalkiness of endosperm
53 AQGB081 chalkiness of endosperm
54 AQGB082 chalkiness of endosperm
55 AQGB083 chalkiness of endosperm
56 AQGB088 chalkiness of endosperm
57 AQGB089 chalkiness of endosperm
58 AQGB090 chalkiness of endosperm
59 AQGB091 chalkiness of endosperm
60 AQGB092 chalkiness of endosperm
61 AQGB093 chalkiness of endosperm
62 AQGB094 chalkiness of endosperm
63 AQGB095 chalkiness of endosperm
64 CQF11 rubisco content
65 AQBZ014 plant height
66 CQR9 flour color
67 EQC0032 seed shattering
68 AQEE003 seed density
69 AQDX013 osmotic adjustment capacity
70 AQFF069 plant height
71 AQFF072 plant height
72 AQFF013 total biomass yield
73 AQFF043 spikelet sterility
74 AQGS036 grain yield
75 AQHR052 plant height
76 AQFE100 plant height
77 AQFF057 panicle number
78 AQFF063 panicle number
79 AQBP007 grain core percent white
80 AQAP016 brown planthopper resistance
81 AQAP018 brown planthopper resistance
82 AQAW015 primary branch
83 AQCU171 spikelet fertility
84 AQCU228 leaf width
85 AQFW124 spikelet fertility
86 AQFW134 days to heading
87 AQDY110 panicle length
88 AQDY111 panicle length
89 AQDY112 panicle length
90 AQDY113 panicle length
91 AQDY114 panicle length
92 AQDY115 panicle length
93 AQO028 root to shoot ratio
94 CQE69 chlorophyll content
95 CQE70 grain number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0001012 G early unicellular microspore stage (+)
10 PO:0007022 imbibition (+)
11 PO:0007065 LP.05 five leaves visible (+)
12 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009006 shoot system (+)
4 PO:0009010 seed (+)
5 PO:0009066 anther (+)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


Fukumoto Takeshi; Kano Akihito; Ohtani Kouhei; Inoue Megumi; Yoshihara Akihide; Izumori Ken; Tajima Shigeyuki; Shigematsu Yoshio; Tanaka Keiji; Ohkouchi Takeo; Ishida Yutaka; Nishizawa Yoko; Tada Yasuomi; Ichimura Kazuya; Gomi Kenji; Yoo Sang-Dong; Sheen Jen; Akimitsu Kazuya; Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L. Planta 2013:
PMID [23397192]


Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Song Shiyong; Dai Xiaoyan; Zhang Wen-Hao; A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice. Journal of experimental botany 2012:63
PMID [22859682]


Ye Nenghui; Zhu Guohui; Liu Yinggao; Li Yingxuan; Zhang Jianhua; ABA controls H₂O₂ accumulation through the induction of OsCATB in rice leaves under water stress. Plant & cell physiology 2011:52
PMID [21398647]


Zhu Guohui; Ye Nenghui; Zhang Jianhua; Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis. Plant & cell physiology 2009:50
PMID [19208695]


Oliver Sandra N; Dennis Elizabeth S; Dolferus Rudy; ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant & cell physiology 2007:48
PMID [17693452]


Saika Hiroaki; Okamoto Masanori; Miyoshi Kentaro; Kushiro Tetsuo; Shinoda Shoko; Jikumaru Yusuke; Fujimoto Masaru; Arikawa Taku; Takahashi Hirokazu; Ando Miho; Arimura Shin-Ichi; Miyao Akio; Hirochika Hirohiko; Kamiya Yuji; Tsutsumi Nobuhiro; Nambara Eiji; Nakazono Mikio; Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice. Plant & cell physiology 2007:48
PMID [17205969]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India