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Searching for LOC_Os08g36910
[alpha-amylase precursor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os08g36910.1 |
477 |
66 |
404 |
PF00128.16 |
Alpha-amylase |
2 |
LOC_Os08g36910.1 |
477 |
405 |
465 |
PF07821.4 |
Alpha-amyl_C2 |
3 |
LOC_Os08g36910.2 |
423 |
12 |
350 |
PF00128.16 |
Alpha-amylase |
4 |
LOC_Os08g36910.2 |
423 |
351 |
411 |
PF07821.4 |
Alpha-amyl_C2 |
5 |
LOC_Os08g36910.3 |
397 |
66 |
383 |
PF00128.16 |
Alpha-amylase |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016787 |
hydrolase activity |
(RGAP) |
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Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005576 |
extracellular region |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007068 |
ethylene regimen |
(+) |
2 |
EO:0007069 |
gibberellic acid regimen |
(+) |
3 |
EO:0007198 |
water environment |
(+) |
4 |
EO:0007261 |
copper nutrient regimen |
(+) |
5 |
EO:0007332 |
cold air temperature regimen |
(+) |
6 |
MCE:1000010 |
submergence stress |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
PWY-2881 |
cytokinins 7-N-glucoside biosynthesis |
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2 |
PWY-3781 |
aerobic respiration -- electron donor II |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000505 |
30 days post-anthesis stage |
(+) |
2 |
MCP:1000518 |
seedling development stage |
(+) |
3 |
PO:0007022 |
imbibition |
(+) |
4 |
PO:0007065 |
LP.05 five leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Kim Hyun-Bi; Cho Jung-Il; Ryoo Nayeon; Shin Dong-Ho; Park Youn-Il; Hwang Yong-Sic; Lee Sang-Kyu; An Gynheung; Jeon Jong-Seong; Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism. Journal of integrative plant biology 2015:
PMID [25951042]
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2 |
Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]
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3 |
Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]
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4 |
Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]
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5 |
Su Chin-Fen; Wang Yi-Chieh; Hsieh Tsai-Hung; Lu Chung-An; Tseng Tung-Hai; Yu Su-May; A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiology 2010:153
PMID [20130099]
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6 |
Fang Jun; Chai Chenglin; Qian Qian; Li Chunlai; Tang Jiuyou; Sun Lei; Huang Zejun; Guo Xiaoli; Sun Changhui; Liu Min; Zhang Yan; Lu Qingtao; Wang Yiqin; Lu Congming; Han Bin; Chen Fan; Cheng Zhukuan; Chu Chengcai; Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. The Plant journal : for cell and molecular biology 2008:54
PMID [18208525]
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7 |
Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]
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