Rice gene details
Searching for LOC_Os08g39850 [lipoxygenase, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g39850.1 942 132 238 PF01477.15 PLAT
2 LOC_Os08g39850.1 942 249 925 PF00305.11 Lipoxygenase
3 LOC_Os08g39850.2 824 50 120 PF01477.15 PLAT
4 LOC_Os08g39850.2 824 131 807 PF00305.11 Lipoxygenase
5 LOC_Os08g39850.3 245 132 238 PF01477.15 PLAT
6 LOC_Os08g39850.4 824 50 120 PF01477.15 PLAT
7 LOC_Os08g39850.4 824 131 807 PF00305.11 Lipoxygenase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  -149
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  -7

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010269 response to selenium ion  
2 GO:0046685 response to arsenic-containing substance  
3 GO:0006950 response to stress (RGAP)
4 GO:0009607 response to biotic stimulus (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 ILEUSYN-PWY isoleucine biosynthesis from threonine
2 PWY-5409 divinyl ether biosynthesis II (13-LOX)
3 PWY-5410 13-LOX and 13-HPL pathway
4 PWY-735 jasmonic acid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQAP1 scent
3 CQN37 leaf senescence
4 CQN38 leaf senescence
5 CQAS102 spikelet number
6 CQAS103 seed number
7 CQAS104 yield
8 CQAS92 plant height
9 CQAS93 days to heading
10 CQAS94 days to maturity
11 CQAS97 spikelet number
12 CQAS98 spikelet density
13 CQAS99 seed number
14 AQDQ051 spikelet number
15 AQDQ052 plant height
16 AQDQ053 panicle length
17 AQDQ054 panicle length
18 CQAX35 plant height
19 CQAS96 panicle number
20 AQBK001 days to heading
21 CQAS100 seed set percent
22 CQAS101 1000-seed weight
23 CQAS95 panicle length
24 CQC6 days to heading
25 AQFW035 leaf width
26 AQBS019 plant height
27 AQBS026 panicle length
28 AQBS046 grain number
29 AQBS067 grain yield per panicle
30 CQAV6 osmotic adjustment capacity
31 CQAV7 osmotic adjustment capacity
32 CQAV9 osmotic adjustment capacity
33 CQAW25 tiller number
34 CQAW26 root number
35 AQDQ055 filled grain number
36 AQGB056 chalkiness of endosperm
37 AQGB057 chalkiness of endosperm
38 AQGB058 chalkiness of endosperm
39 AQGB059 chalkiness of endosperm
40 AQGB060 chalkiness of endosperm
41 AQGB061 chalkiness of endosperm
42 AQGB062 chalkiness of endosperm
43 AQGB063 chalkiness of endosperm
44 AQGB076 chalkiness of endosperm
45 AQGB077 chalkiness of endosperm
46 AQGB078 chalkiness of endosperm
47 AQGB079 chalkiness of endosperm
48 AQGB080 chalkiness of endosperm
49 AQGB081 chalkiness of endosperm
50 AQGB082 chalkiness of endosperm
51 AQGB083 chalkiness of endosperm
52 AQGB088 chalkiness of endosperm
53 AQGB089 chalkiness of endosperm
54 AQGB090 chalkiness of endosperm
55 AQGB091 chalkiness of endosperm
56 AQGB092 chalkiness of endosperm
57 AQGB093 chalkiness of endosperm
58 AQGB094 chalkiness of endosperm
59 AQGB095 chalkiness of endosperm
60 AQBZ014 plant height
61 CQR9 flour color
62 AQEE003 seed density
63 AQFF069 plant height
64 AQFF072 plant height
65 AQFF057 panicle number
66 AQFF063 panicle number
67 AQBP007 grain core percent white
68 AQAP016 brown planthopper resistance
69 AQAP018 brown planthopper resistance
70 AQAW015 primary branch
71 AQCU171 spikelet fertility
72 AQCU228 leaf width
73 AQFW124 spikelet fertility
74 AQFW134 days to heading
75 AQDY110 panicle length
76 AQDY111 panicle length
77 AQDY112 panicle length
78 AQDY113 panicle length
79 AQDY114 panicle length
80 AQDY115 panicle length
81 CQE69 chlorophyll content
82 CQE70 grain number
83 AQBJ020 primary branch
84 AQO065 root length
85 AQDD008 ash content
86 AQDD009 ash content
87 AQGP023 spikelet fertility

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000646 lipoxygenase activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India