Rice gene details
Searching for LOC_Os08g41990 [aminotransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g41990.1 479 93 366 PF00202.13 Aminotran_3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  -2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0016740 transferase activity (RGAP)
3 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5461 betanidin degradation
2 TRNA-CHARGING-PWY tRNA charging pathway

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQN37 leaf senescence
3 CQN38 leaf senescence
4 AQBK001 days to heading
5 CQAS100 seed set percent
6 CQAS101 1000-seed weight
7 CQAS95 panicle length
8 CQC6 days to heading
9 AQFW035 leaf width
10 AQBS019 plant height
11 AQBS026 panicle length
12 AQBS046 grain number
13 AQBS067 grain yield per panicle
14 CQAW25 tiller number
15 CQAW26 root number
16 AQDQ055 filled grain number
17 AQFF069 plant height
18 AQFF072 plant height
19 AQFF057 panicle number
20 AQFF063 panicle number
21 AQDY110 panicle length
22 AQDY111 panicle length
23 AQDY112 panicle length
24 AQDY113 panicle length
25 AQDY114 panicle length
26 AQDY115 panicle length
27 CQE70 grain number
28 AQO065 root length
29 AQDD008 ash content
30 AQDD009 ash content
31 AQHQ009 days to flower
32 AQDQ056 grain yield per plant
33 AQDQ057 grain yield per plant
34 AQCN027 rice yellow mottle virus resistance
35 CQAX25 plant height
36 AQA010 tiller number
37 AQA038 root thickness
38 AQDZ010 culm thickness
39 CQE71 panicle number
40 CQF10 soluble protein content
41 AQCU033 leaf width
42 AQFR013 seedling vigor
43 AQFR039 seedling vigor
44 AQFR050 seedling vigor
45 AQFV023 seedling vigor
46 AQFV024 seedling vigor
47 AQFV025 seedling vigor
48 AQFV026 seedling vigor
49 AQFV027 seedling vigor
50 AQFV028 seedling vigor
51 AQBJ028 primary branch
52 AQCC004 stigma exsertion
53 AQEE001 filled grain percentage

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India