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Searching for LOC_Os08g42040
[LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os08g42040.1 |
180 |
32 |
113 |
PF00234.14 |
Tryp_alpha_amyl |
2 |
LOC_Os08g42040.2 |
179 |
32 |
113 |
PF00234.14 |
Tryp_alpha_amyl |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003674 |
molecular_function |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007198 |
water environment |
(+) |
3 |
EO:0007338 |
cold water temperature regimen |
(+) |
4 |
EO:0007404 |
drought environment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000173 |
inflorescence 5-10cm stage |
(+) |
2 |
MCP:1000176 |
inflorescence 22-30cm stage |
(+) |
3 |
MCP:1000518 |
seedling development stage |
(+) |
4 |
MCP:1000521 |
mature plant stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]
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