Rice gene details
Searching for LOC_Os08g42040 [LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os08g42040.1 180 32 113 PF00234.14 Tryp_alpha_amyl
2 LOC_Os08g42040.2 179 32 113 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  -4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009651 response to salt stress  
3 GO:0006810 transport (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007338 cold water temperature regimen (+)
4 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK019 days to heading
2 CQN37 leaf senescence
3 CQN38 leaf senescence
4 AQBK001 days to heading
5 CQAS100 seed set percent
6 CQAS101 1000-seed weight
7 CQAS95 panicle length
8 CQC6 days to heading
9 AQFW035 leaf width
10 AQBS019 plant height
11 AQBS026 panicle length
12 AQBS046 grain number
13 AQBS067 grain yield per panicle
14 CQAW25 tiller number
15 CQAW26 root number
16 AQDQ055 filled grain number
17 AQFF069 plant height
18 AQFF072 plant height
19 AQFF057 panicle number
20 AQFF063 panicle number
21 AQDY110 panicle length
22 AQDY111 panicle length
23 AQDY112 panicle length
24 AQDY113 panicle length
25 AQDY114 panicle length
26 AQDY115 panicle length
27 CQE70 grain number
28 AQO065 root length
29 AQDD008 ash content
30 AQDD009 ash content
31 AQHQ009 days to flower
32 AQDQ056 grain yield per plant
33 AQDQ057 grain yield per plant
34 AQCN027 rice yellow mottle virus resistance
35 CQAX25 plant height
36 AQA010 tiller number
37 AQA038 root thickness
38 AQDZ010 culm thickness
39 CQE71 panicle number
40 CQF10 soluble protein content
41 AQCU033 leaf width
42 AQFR013 seedling vigor
43 AQFR039 seedling vigor
44 AQFR050 seedling vigor
45 AQFV023 seedling vigor
46 AQFV024 seedling vigor
47 AQFV025 seedling vigor
48 AQFV026 seedling vigor
49 AQFV027 seedling vigor
50 AQFV028 seedling vigor
51 AQBJ028 primary branch
52 AQCC004 stigma exsertion
53 AQEE001 filled grain percentage
54 AQGA039 gelatinization temperature

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000173 inflorescence 5-10cm stage (+)
2 MCP:1000176 inflorescence 22-30cm stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India