Rice gene details
Searching for LOC_Os09g03939 [white-brown complex homolog protein 11, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g03939.1 710 123 313 PF00005.19 ABC_tran
2 LOC_Os09g03939.1 710 412 624 PF01061.16 ABC2_membrane
3 LOC_Os09g03939.2 526 228 440 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -10
N22 Root FC
  8
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009651 response to salt stress  
2 GO:0009733 response to auxin stimulus  
3 GO:0009735 response to cytokinin stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009751 response to salicylic acid stimulus  
6 GO:0009753 response to jasmonic acid stimulus  
7 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
8 GO:0010555 response to mannitol stimulus  
9 GO:0006950 response to stress (RGAP)
10 GO:0006810 transport (RGAP)
11 GO:0009987 cellular process (RGAP)
12 GO:0009719 response to endogenous stimulus (RGAP)
13 GO:0009056 catabolic process (RGAP)
14 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
15 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEK010 iron sensitivity
2 AQGB064 chalkiness of endosperm
3 AQGB065 chalkiness of endosperm
4 AQGB066 chalkiness of endosperm
5 AQGB067 chalkiness of endosperm
6 AQGB068 chalkiness of endosperm
7 AQGB069 chalkiness of endosperm
8 AQGB070 chalkiness of endosperm
9 AQGB071 chalkiness of endosperm
10 AQGB085 chalkiness of endosperm
11 AQGB086 chalkiness of endosperm
12 AQGB087 chalkiness of endosperm
13 AQGB096 chalkiness of endosperm
14 AQGB097 chalkiness of endosperm
15 AQGB098 chalkiness of endosperm
16 AQGB099 chalkiness of endosperm
17 AQGB100 chalkiness of endosperm
18 AQGB101 chalkiness of endosperm
19 AQGB102 chalkiness of endosperm
20 AQFF030 spikelet number
21 AQFF032 spikelet number
22 AQFF034 spikelet number
23 AQFF037 spikelet number
24 AQFT016 basal root thickness
25 AQFT041 penetrated root thickness
26 CQH29 basal root thickness
27 AQBM008 albino plantlet differentiation frequency
28 AQBY003 root length
29 AQBR002 days to heading
30 AQBK037 spikelet number
31 AQAQ005 blast disease resistance
32 AQAQ014 blast disease resistance
33 AQAQ022 blast disease resistance
34 AQCU149 panicle length
35 AQCU206 plant height
36 AQCU258 spikelet fertility
37 AQFW027 spikelet number
38 AQFW178 spikelet number
39 AQAC016 total biomass yield
40 AQAC023 biomass yield
41 AQCY023 grain yield
42 AQAI067 large vascular bundle number to spikelet number ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India