Rice gene details
Searching for LOC_Os09g09790 [Fe-S metabolism associated domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g09790.1 367 79 206 PF02657.7 SufE
2 LOC_Os09g09790.1 367 287 366 PF01722.10 BolA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0030234 enzyme regulator activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010044 response to aluminum ion  
4 GO:0010106 cellular response to iron ion starvation  
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0000003 reproduction (RGAP)
9 GO:0009791 post-embryonic development (RGAP)
10 GO:0009790 embryo development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000143 iron deficiency treatment (+)
2 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEK010 iron sensitivity
2 AQGB064 chalkiness of endosperm
3 AQGB065 chalkiness of endosperm
4 AQGB066 chalkiness of endosperm
5 AQGB067 chalkiness of endosperm
6 AQGB068 chalkiness of endosperm
7 AQGB069 chalkiness of endosperm
8 AQGB070 chalkiness of endosperm
9 AQGB071 chalkiness of endosperm
10 AQGB085 chalkiness of endosperm
11 AQGB086 chalkiness of endosperm
12 AQGB087 chalkiness of endosperm
13 AQGB096 chalkiness of endosperm
14 AQGB097 chalkiness of endosperm
15 AQGB098 chalkiness of endosperm
16 AQGB099 chalkiness of endosperm
17 AQGB100 chalkiness of endosperm
18 AQGB101 chalkiness of endosperm
19 AQGB102 chalkiness of endosperm
20 AQBM008 albino plantlet differentiation frequency
21 AQBY003 root length
22 AQBR002 days to heading
23 AQBK037 spikelet number
24 AQAQ005 blast disease resistance
25 AQAQ014 blast disease resistance
26 AQAQ022 blast disease resistance
27 AQCU149 panicle length
28 AQCU206 plant height
29 AQCU258 spikelet fertility
30 AQFW027 spikelet number
31 AQFW178 spikelet number
32 AQAC016 total biomass yield
33 AQAC023 biomass yield
34 AQCY023 grain yield
35 AQAI067 large vascular bundle number to spikelet number ratio
36 CQAW27 root number
37 CQE74 shoot elongation rate
38 AQCN011 plant height
39 AQCN012 plant height
40 AQCN013 grain yield per plant
41 CQAT1 submergence tolerance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India