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Searching for LOC_Os09g11460
[AP2 domain containing protein, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os09g11460.1 |
233 |
112 |
163 |
PF00847.12 |
AP2 |
2 |
LOC_Os09g11460.2 |
233 |
112 |
163 |
PF00847.12 |
AP2 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003677 |
DNA binding |
(RGAP) |
2 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009628 |
response to abiotic stimulus |
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2 |
GO:0009723 |
response to ethylene stimulus |
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3 |
GO:0009739 |
response to gibberellin stimulus |
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4 |
GO:0030912 |
response to deep water |
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5 |
GO:0008152 |
metabolic process |
(RGAP) |
6 |
GO:0009058 |
biosynthetic process |
(RGAP) |
7 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
8 |
GO:0006950 |
response to stress |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005634 |
nucleus |
(RGAP) |
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]
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2 |
Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The submergence tolerance gene, SUB1A, delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 2012:
PMID [23073696]
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3 |
Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]
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4 |
Jung Ki-Hong; Seo Young-Su; Walia Harkamal; Cao Peijian; Fukao Takeshi; Canlas Patrick E; Amonpant Fawn; Bailey-Serres Julia; Ronald Pamela C; The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology 2010:152
PMID [20107022]
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5 |
Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]
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6 |
Xu Kenong; Xu Xia; Fukao Takeshi; Canlas Patrick; Maghirang-Rodriguez Reycel; Heuer Sigrid; Ismail Abdelbagi M; Bailey-Serres Julia; Ronald Pamela C; Mackill David J; Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 2006:442
PMID [16900200]
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