Rice gene details
Searching for LOC_Os09g12240 [serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g12240.1 1215 30 77 PF08263.4 LRRNT_2
2 LOC_Os09g12240.1 1215 254 277 PF00560.25 LRR_1
3 LOC_Os09g12240.1 1215 329 351 PF00560.25 LRR_1
4 LOC_Os09g12240.1 1215 354 376 PF00560.25 LRR_1
5 LOC_Os09g12240.1 1215 403 423 PF00560.25 LRR_1
6 LOC_Os09g12240.1 1215 454 476 PF00560.25 LRR_1
7 LOC_Os09g12240.1 1215 478 500 PF00560.25 LRR_1
8 LOC_Os09g12240.1 1215 527 549 PF00560.25 LRR_1
9 LOC_Os09g12240.1 1215 551 573 PF00560.25 LRR_1
10 LOC_Os09g12240.1 1215 599 621 PF00560.25 LRR_1
11 LOC_Os09g12240.1 1215 691 713 PF00560.25 LRR_1
12 LOC_Os09g12240.1 1215 715 737 PF00560.25 LRR_1
13 LOC_Os09g12240.1 1215 739 761 PF00560.25 LRR_1
14 LOC_Os09g12240.1 1215 912 1112 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0016301 kinase activity (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEK010 iron sensitivity
2 AQGB064 chalkiness of endosperm
3 AQGB065 chalkiness of endosperm
4 AQGB066 chalkiness of endosperm
5 AQGB067 chalkiness of endosperm
6 AQGB068 chalkiness of endosperm
7 AQGB069 chalkiness of endosperm
8 AQGB070 chalkiness of endosperm
9 AQGB071 chalkiness of endosperm
10 AQGB085 chalkiness of endosperm
11 AQGB086 chalkiness of endosperm
12 AQGB087 chalkiness of endosperm
13 AQGB096 chalkiness of endosperm
14 AQGB097 chalkiness of endosperm
15 AQGB098 chalkiness of endosperm
16 AQGB099 chalkiness of endosperm
17 AQGB100 chalkiness of endosperm
18 AQGB101 chalkiness of endosperm
19 AQGB102 chalkiness of endosperm
20 AQBM008 albino plantlet differentiation frequency
21 AQBY003 root length
22 AQBR002 days to heading
23 AQBK037 spikelet number
24 AQAQ005 blast disease resistance
25 AQAQ014 blast disease resistance
26 AQAQ022 blast disease resistance
27 AQCU149 panicle length
28 AQCU206 plant height
29 AQCU258 spikelet fertility
30 AQFW027 spikelet number
31 AQFW178 spikelet number
32 AQAI067 large vascular bundle number to spikelet number ratio
33 CQAW27 root number
34 CQE74 shoot elongation rate
35 AQCN011 plant height
36 AQCN012 plant height
37 AQCN013 grain yield per plant
38 CQAT1 submergence tolerance
39 AQD036 relative water content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sakamoto Tomoaki; Morinaka Yoichi; Inukai Yoshiaki; Kitano Hidemi; Fujioka Shozo; Auxin signal transcription factor regulates expression of brassinosteroid receptor gene in rice. The Plant journal 2012:
PMID [23146214]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India