Rice gene details
Searching for LOC_Os09g13570 [CPuORF2 - conserved peptide uORF-containing transcript, expressed ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding  
2 GO:0042803 protein homodimerization activity  
3 GO:0046982 protein heterodimerization activity  
4 GO:0046983 protein dimerization activity  
5 GO:0003677 DNA binding (RGAP)
6 GO:0005515 protein binding (RGAP)
7 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0042538 hyperosmotic salinity response  
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007198 water environment (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000285 recovery treatment from salt stress (+)
7 MCE:1000286 recovery treatment from drought stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEK010 iron sensitivity
2 AQGB064 chalkiness of endosperm
3 AQGB065 chalkiness of endosperm
4 AQGB066 chalkiness of endosperm
5 AQGB067 chalkiness of endosperm
6 AQGB068 chalkiness of endosperm
7 AQGB069 chalkiness of endosperm
8 AQGB070 chalkiness of endosperm
9 AQGB071 chalkiness of endosperm
10 AQGB085 chalkiness of endosperm
11 AQGB086 chalkiness of endosperm
12 AQGB087 chalkiness of endosperm
13 AQGB096 chalkiness of endosperm
14 AQGB097 chalkiness of endosperm
15 AQGB098 chalkiness of endosperm
16 AQGB099 chalkiness of endosperm
17 AQGB100 chalkiness of endosperm
18 AQGB101 chalkiness of endosperm
19 AQGB102 chalkiness of endosperm
20 AQBM008 albino plantlet differentiation frequency
21 AQBY003 root length
22 AQBR002 days to heading
23 AQBK037 spikelet number
24 AQAQ005 blast disease resistance
25 AQAQ014 blast disease resistance
26 AQAQ022 blast disease resistance
27 AQCU149 panicle length
28 AQCU206 plant height
29 AQCU258 spikelet fertility
30 AQFW027 spikelet number
31 AQFW178 spikelet number
32 CQAW27 root number
33 CQE74 shoot elongation rate
34 AQCN011 plant height
35 AQCN012 plant height
36 AQCN013 grain yield per plant
37 AQD036 relative water content
38 DQA6 cell membrane stability
39 AQU014 total shoot elongation under submergence
40 AQU019 total shoot elongation under submergence
41 AQU047 leaf senescence
42 CQS9 seminal root length
43 AQBM007 green plantlet differentiation frequency
44 AQBM010 green plantlet yield frequency

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 TO:0000019 seedling height (+)
3 TO:0000207 plant height (+)
4 TO:0000227 root length (+)
5 TO:0000272 plant survivability (+)
6 TO:0000346 tiller number (+)
7 TO:0000449 grain yield per plant (+)
8 TO:0000455 seed set percent (+)
9 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os09g13570 - --- LOC_Os02g07840 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 LOC_Os09g13570 - --- LOC_Os02g16680 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
3 LOC_Os09g13570 - --- LOC_Os03g58250 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
4 LOC_Os09g13570 - --- LOC_Os06g45140 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
5 LOC_Os09g13570 - --- LOC_Os07g07830 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
6 LOC_Os09g13570 - --- LOC_Os09g13570 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
7 LOC_Os09g13570 - --- LOC_Os12g40920 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os09g13570 - --- LOC_Os05g49170 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
2 LOC_Os09g13570 - --- LOC_Os07g47100 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
3 LOC_Os09g13570 - --- - - - - S000042 Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India