Rice gene details
Searching for LOC_Os09g17740 [chlorophyll A-B binding protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g17740.1 266 64 232 PF00504.13 Chloroa_b-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  2
N22 Root FC
  -4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  5
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0006091 generation of precursor metabolites and energy (RGAP)
3 GO:0015979 photosynthesis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 MCE:1000351 5-aminolevulinic acid (+)
4 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQAW27 root number
3 CQE74 shoot elongation rate
4 AQCN011 plant height
5 AQCN012 plant height
6 AQCN013 grain yield per plant
7 CQS9 seminal root length
8 AQBM007 green plantlet differentiation frequency
9 AQBM010 green plantlet yield frequency
10 AQFT005 osmotic adjustment capacity
11 AQR039 rooting depth
12 CQH30 osmotic adjustment capacity
13 CQQ5 root weight
14 CQAN6 sheath blight disease resistance
15 AQR040 rooting depth
16 AQGH009 filled grain number
17 AQGH015 seed weight
18 AQGH026 filled grain number
19 AQGH032 seed weight
20 AQF016 seed dormancy
21 AQF022 seed dormancy
22 AQF033 seed dormancy
23 AQF050 awn length
24 AQF070 anther length
25 AQF081 grain yield
26 AQF115 apiculus hair length
27 AQF128 germination speed
28 AQF142 mesocotyl length
29 CQAH37 seed dormancy
30 CQAH38 seed dormancy
31 CQAH39 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
3 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 PO:0009006 shoot system (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Ricachenevsky Felipe Klein; Sperotto Raul Antonio; Menguer Paloma Koprovski; Fett Janette Palma; Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence. Molecular Biology Reports 2010:
PMID [20217243]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India