Rice gene details
Searching for LOC_Os09g23640 [ABC-2 type transporter domain containing protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g23640.1 875 135 325 PF00005.19 ABC_tran
2 LOC_Os09g23640.1 875 580 788 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
  -4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -5

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009651 response to salt stress  
3 GO:0009733 response to auxin stimulus  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0009753 response to jasmonic acid stimulus  
7 GO:0010555 response to mannitol stimulus  
8 GO:0006810 transport (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0009056 catabolic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQCN011 plant height
4 AQCN012 plant height
5 AQCN013 grain yield per plant
6 CQS9 seminal root length
7 AQBM007 green plantlet differentiation frequency
8 AQBM010 green plantlet yield frequency
9 AQF016 seed dormancy
10 AQF022 seed dormancy
11 AQF033 seed dormancy
12 AQF050 awn length
13 AQF070 anther length
14 AQF081 grain yield
15 AQF115 apiculus hair length
16 AQF128 germination speed
17 AQF142 mesocotyl length
18 CQAH37 seed dormancy
19 CQAH38 seed dormancy
20 CQAH39 seed dormancy
21 CQE73 shoot elongation rate
22 AQAL006 deep root dry weight
23 AQEA109 plant height
24 AQEA110 plant height
25 AQEA111 plant height
26 AQEA112 plant height
27 AQEA113 plant height
28 AQEA114 plant height
29 AQEA115 plant height
30 AQEA116 plant height
31 AQEA117 plant height
32 AQEA118 plant height
33 AQEA119 plant height
34 AQEA120 plant height
35 AQEA121 plant height
36 AQEA279 days to heading
37 AQEA280 days to heading
38 AQEA281 days to heading
39 AQEA282 days to heading
40 AQEA283 days to heading
41 AQEA284 days to heading
42 AQEA285 days to heading
43 AQEA286 days to heading
44 AQEA287 days to heading
45 AQEA288 days to heading
46 AQEA289 days to heading
47 CQAI18 tiller number
48 CQAI23 root length
49 CQQ39 root weight
50 CQQ8 root weight
51 DQE42 relative growth rate
52 AQA015 tiller number
53 AQA020 root length
54 CQAX26 plant height
55 AQEP006 seedling vigor
56 CQA26 vegetative growth time
57 CQA27 reproductive growth time

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India