Rice gene details
Searching for LOC_Os09g25490 [CESA9 - cellulose synthase, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g25490.1 1056 251 1050 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -12
N22InfloresenceFC
  -4
N22 Root FC
  5
IR64 Flag-leaf FC
  22
IR64InfloresenceFC
  2
IR64 Root FC
  4

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0016043 cellular component organization (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1001 cellulose biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQCN011 plant height
4 AQCN012 plant height
5 AQCN013 grain yield per plant
6 CQS9 seminal root length
7 AQBM007 green plantlet differentiation frequency
8 AQBM010 green plantlet yield frequency
9 AQF016 seed dormancy
10 AQF022 seed dormancy
11 AQF033 seed dormancy
12 AQF050 awn length
13 AQF070 anther length
14 AQF081 grain yield
15 AQF115 apiculus hair length
16 AQF128 germination speed
17 AQF142 mesocotyl length
18 CQAH37 seed dormancy
19 CQAH38 seed dormancy
20 CQAH39 seed dormancy
21 CQE73 shoot elongation rate
22 AQAL006 deep root dry weight
23 AQEA109 plant height
24 AQEA110 plant height
25 AQEA111 plant height
26 AQEA112 plant height
27 AQEA113 plant height
28 AQEA114 plant height
29 AQEA115 plant height
30 AQEA116 plant height
31 AQEA117 plant height
32 AQEA118 plant height
33 AQEA119 plant height
34 AQEA120 plant height
35 AQEA121 plant height
36 AQEA279 days to heading
37 AQEA280 days to heading
38 AQEA281 days to heading
39 AQEA282 days to heading
40 AQEA283 days to heading
41 AQEA284 days to heading
42 AQEA285 days to heading
43 AQEA286 days to heading
44 AQEA287 days to heading
45 AQEA288 days to heading
46 AQEA289 days to heading
47 CQAI18 tiller number
48 CQAI23 root length
49 CQQ39 root weight
50 CQQ8 root weight
51 DQE42 relative growth rate
52 AQA015 tiller number
53 AQA020 root length
54 CQAX26 plant height
55 AQEP006 seedling vigor
56 AQBR003 days to heading
57 AQEM007 salt sensitivity
58 AQGG004 callus induction
59 AQAD002 sheath blight disease resistance
60 AQGI088 root dry weight
61 AQGI097 root dry weight
62 AQHR023 tiller number
63 AQAF038 blast disease resistance
64 AQAF039 blast disease resistance
65 AQAI004 leaf area
66 AQCA004 seed length
67 AQFJ010 panicle number
68 AQFJ049 panicle length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (-)
3 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000595 second stem internode (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000375 cellulose content (+)
2 MCT:1000533 cell wall thickness (+)
3 TO:0000207 plant height (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Yang Chunhua; Li Dayong; Liu Xue; Ji Chengjun; Hao Lili; Zhao Xianfeng; Li Xiaobing; Chen Caiyan; Cheng Zhukuan; Zhu Lihuang; OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [24906444]


2  Dai Xiaoxia; You Changjun; Chen Guoxing; Li Xianghua; Zhang Qifa; Wu Changyin; OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice. Plant Molecular Biology 2011:75
PMID [21264494]


3  Tanaka Katsuyuki; Murata Kazumasa; Yamazaki Muneo; Onosato Katsura; Miyao Akio; Hirochika Hirohiko; Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant physiology 2003:133
PMID [12970476]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India