Rice gene details
Searching for LOC_Os09g26810 [chlorophyll A-B binding protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g26810.1 265 67 235 PF00504.13 Chloroa_b-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
 
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
Biological process
Not found
1 GO:0009628 response to abiotic stimulus (RGAP)
2 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0005622 intracellular (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007235 silicon nutrient regimen (+)
2 EO:0007309 zinc nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQBR003 days to heading
9 AQEM007 salt sensitivity
10 AQGG004 callus induction
11 AQAD002 sheath blight disease resistance
12 AQGI088 root dry weight
13 AQGI097 root dry weight
14 AQHR023 tiller number
15 AQAF038 blast disease resistance
16 AQAF039 blast disease resistance
17 AQAI004 leaf area
18 AQCA004 seed length
19 AQFJ010 panicle number
20 AQFJ049 panicle length
21 CQAS110 spikelet number
22 AQDY116 panicle length
23 AQDY117 panicle length
24 AQDY118 tiller number
25 AQHE006 root length
26 AQHE052 root weight
27 AQHE055 root weight
28 AQHE059 root weight
29 AQHE085 root weight
30 AQHE109 total biomass yield
31 AQHE134 plant height
32 AQHE140 plant height
33 AQF004 grain shattering
34 AQF040 seed dormancy
35 AQF071 anther length
36 AQF102 KClO3 resistance
37 AQFE116 tiller angle
38 CQAS108 panicle length
39 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Alin; Li Ping; Fan Fenliang; Li Zhaojun; Liang Yongchao; The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress. PloS one 2014:9
PMID [25426937]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India