Rice gene details
Searching for LOC_Os09g27620 [PHD-finger domain containing protein, putative ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g27620.1 680 622 670 PF00628.21 PHD
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -3
N22 Root FC
  3
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
 

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009856 pollination (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0007275 multicellular organismal development (RGAP)
7 GO:0007049 cell cycle (RGAP)
8 GO:0009653 anatomical structure morphogenesis (RGAP)
9 GO:0009908 flower development (RGAP)
10 GO:0016043 cellular component organization (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQBR003 days to heading
9 AQEM007 salt sensitivity
10 AQGG004 callus induction
11 AQAD002 sheath blight disease resistance
12 AQGI088 root dry weight
13 AQGI097 root dry weight
14 AQHR023 tiller number
15 AQAF038 blast disease resistance
16 AQAF039 blast disease resistance
17 AQAI004 leaf area
18 AQCA004 seed length
19 AQFJ010 panicle number
20 AQFJ049 panicle length
21 CQAS110 spikelet number
22 AQDY116 panicle length
23 AQDY117 panicle length
24 AQDY118 tiller number
25 AQHE006 root length
26 AQHE052 root weight
27 AQHE055 root weight
28 AQHE059 root weight
29 AQHE085 root weight
30 AQHE109 total biomass yield
31 AQHE134 plant height
32 AQHE140 plant height
33 AQF004 grain shattering
34 AQF040 seed dormancy
35 AQF071 anther length
36 AQF102 KClO3 resistance
37 AQFE116 tiller angle
38 CQAS108 panicle length
39 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009046 flower (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India