Rice gene details
Searching for LOC_Os09g27750 [1-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g27750.1 323 159 259 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -34
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010106 cellular response to iron ion starvation  
3 GO:0050896 response to stimulus  
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
3 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CALVIN-PWY Calvin cycle

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQEM007 salt sensitivity
9 AQGG004 callus induction
10 AQAD002 sheath blight disease resistance
11 AQGI088 root dry weight
12 AQGI097 root dry weight
13 AQHR023 tiller number
14 AQAF038 blast disease resistance
15 AQAF039 blast disease resistance
16 AQAI004 leaf area
17 AQCA004 seed length
18 AQFJ010 panicle number
19 AQFJ049 panicle length
20 CQAS110 spikelet number
21 AQDY116 panicle length
22 AQDY117 panicle length
23 AQDY118 tiller number
24 AQHE006 root length
25 AQHE052 root weight
26 AQHE055 root weight
27 AQHE059 root weight
28 AQHE085 root weight
29 AQHE109 total biomass yield
30 AQHE134 plant height
31 AQHE140 plant height
32 AQF004 grain shattering
33 AQF040 seed dormancy
34 AQF071 anther length
35 AQF102 KClO3 resistance
36 AQFE116 tiller angle
37 CQAS108 panicle length
38 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000320 upper part of first internode (-)
3 MCP:1000321 middle part of first internode (-)
4 MCP:1000322 lower part of first internode (-)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009006 shoot system (+)
8 PO:0009046 flower (+)
9 PO:0020039 leaf lamina (-)
10 PO:0020104 leaf sheath (-)
11 PO:0020122 inflorescence axis (-)
12 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


2  Wan Liyun; Zhang Jianfei; Zhang Haiwen; Zhang Zhijin; Quan Ruidang; Zhou Shirong; Huang Rongfeng; Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice. Plos One 2011:6
PMID [21966459]


3  Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62
PMID [21112958]


4  Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


5  Mao Chuanzao; Wang Shaomin; Jia Qiaojun; Wu Ping; OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Plant Molecular Biology 2006:61
PMID [16786297]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India