Rice gene details
Searching for LOC_Os09g28310 [bZIP transcription factor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g28310.1 377 297 353 PF00170.13 bZIP_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  32
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding  
2 GO:0016563 transcription activator activity  
3 GO:0003677 DNA binding (RGAP)
4 GO:0005515 protein binding (RGAP)
5 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009620 response to fungus  
3 GO:0009733 response to auxin stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009753 response to jasmonic acid stimulus  
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0007165 signal transduction (RGAP)
8 GO:0006950 response to stress (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007204 1-naphthaleneacetic acid (+)
4 EO:0007226 Magnaporthe grisea (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007404 drought environment (+)
7 EO:0007407 methyl jasmonate (+)
8 MCE:1000016 polyethylene glycol (PEG) treatment (+)
9 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
10 MCE:1000069 dessication/dehydration stress (+)
11 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQEM007 salt sensitivity
9 AQGG004 callus induction
10 AQAD002 sheath blight disease resistance
11 AQGI088 root dry weight
12 AQGI097 root dry weight
13 AQHR023 tiller number
14 AQAF038 blast disease resistance
15 AQAF039 blast disease resistance
16 AQAI004 leaf area
17 AQCA004 seed length
18 AQFJ010 panicle number
19 AQFJ049 panicle length
20 CQAS110 spikelet number
21 AQDY116 panicle length
22 AQDY117 panicle length
23 AQDY118 tiller number
24 AQHE006 root length
25 AQHE052 root weight
26 AQHE055 root weight
27 AQHE059 root weight
28 AQHE085 root weight
29 AQHE109 total biomass yield
30 AQHE134 plant height
31 AQHE140 plant height
32 AQF004 grain shattering
33 AQF040 seed dormancy
34 AQF071 anther length
35 AQF102 KClO3 resistance
36 AQFE116 tiller angle
37 CQAS108 panicle length
38 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
3 PO:0007057 0 germination (+)
4 PO:0007106 LP.03 three leaves visible (+)
5 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009010 seed (+)
4 PO:0009025 vascular leaf (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000056 relative root number (+)
3 TO:0000019 seedling height (+)
4 TO:0000430 germination rate (+)
5 TO:0000516 relative root length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os09g28310 - --- - - - - S000281 Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Wei Shuya; Hu Wei; Deng Xiaomin; Zhang Yingying; Liu Xiaodong; Zhao Xudong; Luo Qingchen; Jin Zhengyi; Li Yin; Zhou Shiyi; Sun Tao; Wang Lianzhe; Yang Guangxiao; He Guangyuan; A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility. BMC plant biology 2014:14
PMID [24884869]


2  Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


3  Park Gi-Gyeong; Park Jong-Jin; Yoon Jinmi; Yu Sun-Nam; An Gynheung; A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice. Plant Molecular Biology 2010:74
PMID [20878348]


4  Lu Guojun; Gao Chenxi; Zheng Xingnan; Han Bin; Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta 2009:229
PMID [19048288]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India