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Searching for LOC_Os09g28420
[alpha-amylase precursor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os09g28420.1 |
438 |
27 |
365 |
PF00128.16 |
Alpha-amylase |
2 |
LOC_Os09g28420.1 |
438 |
366 |
426 |
PF07821.4 |
Alpha-amyl_C2 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016787 |
hydrolase activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009739 |
response to gibberellin stimulus |
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2 |
GO:0008152 |
metabolic process |
(RGAP) |
3 |
GO:0009719 |
response to endogenous stimulus |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005576 |
extracellular region |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007024 |
aerobic environment |
(-) |
2 |
EO:0007068 |
ethylene regimen |
(+) |
3 |
EO:0007069 |
gibberellic acid regimen |
(+) |
4 |
MCE:1000010 |
submergence stress |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
PWY-842 |
starch degradation |
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2 |
SUCUTIL-PWY |
sucrose degradation I |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007065 |
LP.05 five leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009006 |
shoot system |
(+) |
2 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]
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2 |
Fukao Takeshi; Harris Tristan; Bailey-Serres Julia; Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Annals of Botany 2009:103
PMID [18824474]
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3 |
Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]
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