Rice gene details
Searching for LOC_Os09g29100 [cyclin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g29100.1 357 67 203 PF00134.15 Cyclin_N
2 LOC_Os09g29100.1 357 205 326 PF02984.11 Cyclin_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  -5

Functional details
Molecular Function
Not found
1 GO:0016301 kinase activity (RGAP)
Biological process
Not found
1 GO:0009791 post-embryonic development (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006464 protein modification process (RGAP)
4 GO:0007049 cell cycle (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007204 1-naphthaleneacetic acid (+)
2 MCE:1000173 cadmium nutrient regimen (+)
3 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQEM007 salt sensitivity
9 AQGG004 callus induction
10 AQAD002 sheath blight disease resistance
11 AQGI088 root dry weight
12 AQGI097 root dry weight
13 AQHR023 tiller number
14 AQAF038 blast disease resistance
15 AQAF039 blast disease resistance
16 AQAI004 leaf area
17 AQCA004 seed length
18 AQFJ010 panicle number
19 AQFJ049 panicle length
20 CQAS110 spikelet number
21 AQDY116 panicle length
22 AQDY117 panicle length
23 AQDY118 tiller number
24 AQHE006 root length
25 AQHE052 root weight
26 AQHE055 root weight
27 AQHE059 root weight
28 AQHE085 root weight
29 AQHE109 total biomass yield
30 AQHE134 plant height
31 AQHE140 plant height
32 AQF004 grain shattering
33 AQF040 seed dormancy
34 AQF071 anther length
35 AQF102 KClO3 resistance
36 AQFE116 tiller angle
37 CQAS108 panicle length
38 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 A2X9W8 - LOC_Os09g29100 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
2 AAG16867 - LOC_Os09g29100 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
3 LOC_Os03g01740 - --- LOC_Os09g29100 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhao Heming; Ma Tengfei; Wang Xin; Deng Yingtian; Ma Haoli; Zhang Rongsheng; Zhao Jie; OsAUX1 controls lateral root initiation in rice (Oryza sativa L.). Plant, cell & environment 2014:
PMID [25311360]


Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India