Rice gene details
Searching for LOC_Os09g30454 [OsWAK87 - OsWAK receptor-like protein kinase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g30454.1 446 12 42 PF07645.7 EGF_CA
2 LOC_Os09g30454.1 446 131 394 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  8
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  5
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0016301 kinase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQGG004 callus induction
9 AQAF038 blast disease resistance
10 AQAF039 blast disease resistance
11 AQAI004 leaf area
12 AQCA004 seed length
13 AQHE006 root length
14 AQHE052 root weight
15 AQHE055 root weight
16 AQHE059 root weight
17 AQHE085 root weight
18 AQHE109 total biomass yield
19 AQHE134 plant height
20 AQHE140 plant height
21 AQF004 grain shattering
22 AQF040 seed dormancy
23 AQF071 anther length
24 AQF102 KClO3 resistance
25 AQFE116 tiller angle
26 CQAS108 panicle length
27 AQAC045 root activity
28 AQAC053 seed weight
29 AQAD004 sheath blight disease resistance
30 AQAE023 seed weight
31 AQAF040 blast disease resistance
32 AQAI075 1000-grain weight
33 AQAV002 cold tolerance
34 AQDJ007 internode length
35 AQGS003 plant height
36 AQHR053 plant height
37 AQBK052 seed set percent
38 CQAS107 days to maturity
39 CQAS112 seed number
40 CQAS115 spikelet number
41 AQCQ019 1000-seed weight
42 AQCQ043 1000-seed weight
43 AQEK002 iron sensitivity
44 AQBC069 tiller angle
45 AQBC070 tiller angle
46 AQBC071 tiller angle
47 AQBC072 tiller angle
48 AQBC073 tiller angle
49 AQBX019 panicle weight
50 AQBV001 tiller angle
51 AQBV002 leaf angle
52 AQBV003 leaf angle
53 AQCN028 rice yellow mottle virus resistance
54 AQAI034 leaf area to spikelet number ratio
55 AQHR056 plant height
56 CQE75 space
57 CQE76 chlorophyll content
58 CQF12 soluble protein content
59 CQF13 rubisco content
60 CQAN7 sheath blight disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

de Oliveira Luiz Felipe Valter; Christoff Ana Paula; de Lima Júlio Cesar; de Ross Bruno Comparsi Feijó; Sachetto-Martins Gilberto; Margis-Pinheiro Marcia; Margis Rogerio; The Wall-associated Kinase gene family in rice genomes. Plant science : an international journal of experimental plant biology 2014:229
PMID [25443845]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India