Rice gene details
Searching for LOC_Os09g31486 [DnaK family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g31486.1 685 57 651 PF00012.12 HSP70
2 LOC_Os09g31486.2 547 1 513 PF00012.12 HSP70
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  6
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009408 response to heat  
3 GO:0009412 response to heavy metal  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0010039 response to iron ion  
6 GO:0010106 cellular response to iron ion starvation  
7 GO:0046686 response to cadmium ion  
8 GO:0019538 protein metabolic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0009628 response to abiotic stimulus (RGAP)
12 GO:0008150 biological_process (RGAP)
13 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0005773 vacuole (RGAP)
4 GO:0005618 cell wall (RGAP)
5 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007223 cadmium chloride (+)
5 EO:0007237 normal temperature regimen (+)
6 EO:0007242 iron nutrient regimen (+)
7 EO:0007332 cold air temperature regimen (+)
8 MCE:1000016 polyethylene glycol (PEG) treatment (+)
9 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQGG004 callus induction
9 AQAF038 blast disease resistance
10 AQAF039 blast disease resistance
11 AQAI004 leaf area
12 AQCA004 seed length
13 AQF004 grain shattering
14 AQF040 seed dormancy
15 AQF071 anther length
16 AQF102 KClO3 resistance
17 AQFE116 tiller angle
18 CQAS108 panicle length
19 AQBK052 seed set percent
20 CQAS107 days to maturity
21 CQAS112 seed number
22 CQAS115 spikelet number
23 AQCQ019 1000-seed weight
24 AQCQ043 1000-seed weight
25 AQEK002 iron sensitivity
26 AQBC069 tiller angle
27 AQBC070 tiller angle
28 AQBC071 tiller angle
29 AQBC072 tiller angle
30 AQBC073 tiller angle
31 AQBX019 panicle weight
32 AQBV001 tiller angle
33 AQBV002 leaf angle
34 AQBV003 leaf angle
35 AQCN028 rice yellow mottle virus resistance
36 AQAI034 leaf area to spikelet number ratio
37 AQHR056 plant height
38 CQE75 space
39 CQE76 chlorophyll content
40 CQF12 soluble protein content
41 CQF13 rubisco content
42 CQAN7 sheath blight disease resistance
43 AQGP021 spikelet number
44 AQGM029 1000-seed weight
45 AQGP041 days to heading
46 AQGP057 spikelet number
47 AQCA005 seed length
48 AQGI024 root dry weight
49 AQGI126 biomass yield
50 AQGI206 total biomass yield
51 AQQ034 seed weight
52 AQO063 root length
53 AQGS010 panicle length
54 AQGS028 seed weight
55 AQGS031 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000005 cultured plant cell (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009009 plant embryo (+)
5 PO:0009025 vascular leaf (+)
6 PO:0009047 stem (+)
7 PO:0009049 inflorescence (+)
8 PO:0020104 leaf sheath (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Liu Ai-Ling; Zou Jie; Liu Cui-Fang; Zhou Xiao-Yun; Zhang Xian-Wen; Luo Guang-Yu; Chen Xin-Bo; Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice. BMB Reports 2013:46
PMID [23351381]


Sarkar Neelam K; Kundnani Preeti; Grover Anil; Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa). Cell Stress & Chaperones 2012:
PMID [23264228]


Zou Jie; Liu Ailing; Chen Xinbo; Zhou Xiaoyun; Gao Guofu; Wang Wenfang; Zhang Xianwen; Expression analysis of nine rice heat shock protein genes under abiotic stresses and ABA treatment. Journal of Plant Physiology 2009:166
PMID [19135278]


Yamamoto Taichi; Mori Yoko; Ishibashi Toyotaka; Uchiyama Yukinobu; Ueda Tadamasa; Ando Tsuyu; Hashimoto Junji; Kimura Seisuke; Sakaguchi Kengo; Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage. Journal of plant research 2005:118
PMID [15806324]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India